myRT

myRT report for GCA_900095495.1_B_ovatus_V975

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Seq: LT622246.1 Bacteroides ovatus V975 genome assembly, chromosome: I (6475296 bp)
Overview 1 RT 1: 333180-337593 bp 2 RT 2: 1245845-1254684 bp 3 RT 3: 2718829-2728593 bp 4 RT 4: 3257854-3269194 bp 5 RT 5: 4295075-4299676 bp Neighborhood of RT #1 [333180, 337601] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Neighborhood of RT #2 [1245845, 1254684] COG3292 COG3292 COG3292 Reg_prop COG3292 Y_Y_Y BaeS PRK15347 YesN DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM RVT_N RVT-GII Neighborhood of RT #3 [2718829, 2728601] N6_Mtase COG4646 RVT_N RVT-GII GIIM BcsQ Neighborhood of RT #4 [3257854, 3269310] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #5 [4295075, 4299696] DUF1566 Avd_like RVT-DGRs MurNAc-LAA Feature: gene Location: 333180-333551 bp Ori: SCV06523.1 Feature: domain Description: DUF3876 Location: 333261-333534 bp Feature: domain Description: DUF3876 Location: 333261 -333534 bp Feature: gene Location: 333548-333685 bp Ori: SCV06524.1 Feature: domain Description: Bac_Flav_CT_G Location: 333551-333650 bp Feature: domain Description: Bac_Flav_CT_G Location: 333551 -333650 bp Feature: gene Location: 333789-335612 bp Ori: SCV06525.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334053-334875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334053-334875 bp Feature: domain Description: Intron_maturas2 Location: 335040-335292 bp Feature: domain Description: Intron_maturas2 Location: 335040-335292 bp Feature: domain Description: HNHc Note: nucleases Location: 335403-335574 bp Feature: domain Description: HNHc Note: nucleases Location: 335403-335574 bp Feature: gene Location: 336181-337191 bp Gene: pepD Feature: domain Description: Bac_Flav_CT_G Location: 336196-337180 bp Feature: domain Description: Bac_Flav_CT_G Location: 3361 96-3371 80 bp Feature: gene Location: 337305-337601 bp Gene: pepD Feature: domain Description: Bac_Flav_CT_G Location: 337326-337593 bp Feature: domain Description: Bac_Flav_CT_G Location: 337326-337593 bp Feature: gene Location: 1245845-1249861 bp Ori: SCV07169.1 Feature: domain Description: COG3292 Location: 1245908-1246079 bp Feature: domain Description: COG3292 Location: 1 245908-1 246079 bp Feature: domain Description: COG3292 Location: 1246115-1246415 bp Feature: domain Description: COG3292 Location: 1 2461 1 5-1 24641 5 bp Feature: domain Description: COG3292 Location: 1246508-1246751 bp Feature: domain Description: COG3292 Location: 1 246508-1 246751 bp Feature: domain Description: Reg_prop Location: 1246784-1246835 bp Feature: domain Description: Reg_prop Location: 1 246784-1 246835 bp Feature: domain Description: COG3292 Location: 1247066-1247648 bp Feature: domain Description: COG3292 Location: 1 247066-1 247648 bp Feature: domain Description: Y_Y_Y Location: 1247972-1248119 bp Feature: domain Description: Y_Y_Y Location: 1 247972-1 2481 1 9 bp Feature: domain Description: BaeS Location: 1248245-1248998 bp Feature: domain Description: BaeS Location: 1 248245-1 248998 bp Feature: domain Description: PRK15347 Location: 1249109-1249442 bp Feature: domain Description: PRK1 5347 Location: 1 2491 09-1 249442 bp Feature: domain Description: YesN Location: 1249547-1249847 bp Feature: domain Description: YesN Location: 1 249547-1 249847 bp Feature: gene Location: 1249900-1250298 bp Ori: SCV07170.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1249909-1250140 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 249909-1 2501 40 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1250161-1250281 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 2501 61 -1 250281 bp Feature: gene Location: 1250434-1251291 bp Ori: SCV07171.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1250440-1250614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 250440-1 25061 4 bp Feature: domain Description: GIIM Note: maturase Location: 1250668-1250899 bp Feature: domain Description: GIIM Note: maturase Location: 1 250668-1 250899 bp Feature: gene Location: 1251285-1252100 bp Ori: SCV07172.1 Feature: domain Description: RVT_N Location: 1251339-1251582 bp Feature: domain Description: RVT_N Location: 1 251 339-1 251 582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1251627-1252071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 251 627-1 252071 bp Feature: gene Location: 1253204-1253347 bp Feature: gene Location: 1253443-1254684 bp Feature: gene Location: 2718829-2719461 bp Feature: gene Location: 2720050-2724063 bp Gene: pepD Feature: domain Description: N6_Mtase Location: 2720314-2720950 bp Feature: domain Description: N6_Mtase Location: 272031 4-2720950 bp Feature: domain Description: COG4646 Location: 2721715-2723449 bp Feature: domain Description: COG4646 Location: 2721 71 5-2723449 bp Feature: gene Location: 2724720-2726387 bp Ori: SCV08229.1 Feature: domain Description: RVT_N Location: 2724774-2725017 bp Feature: domain Description: RVT_N Location: 2724774-272501 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725062-2725710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2725062-272571 0 bp Feature: domain Description: GIIM Note: maturase Location: 2725764-2725995 bp Feature: domain Description: GIIM Note: maturase Location: 2725764-2725995 bp Feature: gene Location: 2726338-2727486 bp Feature: gene Location: 2727846-2728601 bp Ori: SCV08231.1 Gene: parA Feature: domain Description: BcsQ Location: 2727849-2728593 bp Feature: domain Description: BcsQ Location: 2727849-2728593 bp Feature: gene Location: 3257854-3257955 bp Feature: gene Location: 3257909-3260116 bp Feature: gene Location: 3260322-3261452 bp Ori: SCV08595.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3260643-3261186 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3260643-3261 1 86 bp Feature: gene Location: 3261454-3267411 bp Ori: SCV08596.1 Feature: domain Description: DUF4011 Location: 3262684-3263197 bp Feature: domain Description: DUF401 1 Location: 3262684-32631 97 bp Feature: domain Description: DEXXQc_SF1 Location: 3263536-3264397 bp Feature: domain Description: DEXXQc_SF1 Location: 3263536-3264397 bp Feature: domain Description: DEXXQc_SF1 Location: 3264964-3265723 bp Feature: domain Description: DEXXQc_SF1 Location: 3264964-3265723 bp Feature: domain Description: TIGR00376 Location: 3265852-3266242 bp Feature: domain Description: TIGR00376 Location: 3265852-3266242 bp Feature: domain Description: MTES_1575 Location: 3266395-3266680 bp Feature: domain Description: MTES_1 575 Location: 3266395-3266680 bp Feature: domain Description: DUF3320 Location: 3266920-3267061 bp Feature: domain Description: DUF3320 Location: 3266920-3267061 bp Feature: gene Location: 3267508-3269310 bp Ori: SCV08597.1 Gene: rpsA Feature: domain Description: rpsA Location: 3267577-3269194 bp Feature: domain Description: rpsA Location: 3267577-32691 94 bp Feature: gene Location: 4295075-4295884 bp Ori: SCV09436.1 Feature: domain Description: DUF1566 Location: 4295606-4295855 bp Feature: domain Description: DUF1 566 Location: 4295606-4295855 bp Feature: gene Location: 4296151-4296438 bp Ori: SCV09437.1 Feature: domain Description: Avd_like Location: 4296160-4296373 bp Feature: domain Description: Avd_like Location: 42961 60-4296373 bp Feature: gene Location: 4296453-4297874 bp Ori: SCV09438.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4296828-4297551 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4296828-4297551 bp Feature: gene Location: 4297837-4298115 bp Feature: gene Location: 4299115-4299696 bp Ori: SCV09440.1 Feature: domain Description: MurNAc-LAA Location: 4299121-4299676 bp Feature: domain Description: MurNAc-LAA Location: 42991 21 -4299676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG3292 (Periplasmic ligand-binding sensor domain ), Reg_prop (pfam07494), Y_Y_Y (pfam07495), BaeS (COG0642), PRK15347 (two component system sensor kinase)
YesN (COG4753), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), GIIM (pfam08388), RVT_N (pfam13655), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), BcsQ (COG1192), RVT-Retrons, DUF4011 (pfam13195)
DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, MurNAc-LAA (cl02713)