myRT

myRT report for GCA_900116695.1_ASM90011669v1

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Seq: LT703505.1 Mycobacterium chimaera strain Mycobacterium chimaera MC045 genome assembly, chromosome: 1 (6078679 bp)
Overview 1 RT 1: 946002-951854 bp 2 RT 2: 2118104-2124904 bp 3 RT 3: 4461011-4466686 bp Neighborhood of RT #1 [946002, 951865] MhpC RVT-GII GIIM TetR_N TetR_C_35 CypX Neighborhood of RT #2 [2118104, 2124915] COG3462 RVT-GII GIIM NuoN NuoM Neighborhood of RT #3 [4461011, 4466686] DUF1490 LZ_Tnp_IS481 Tra5 RVT-GII GIIM AdaB Feature: gene Location: 946002-946898 bp Feature: domain Description: MhpC Location: 946026-946878 bp Feature: domain Description: MhpC Location: 946026-946878 bp Feature: gene Location: 946946-947161 bp Feature: gene Location: 947691-949139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948009-948696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948009-948696 bp Feature: domain Description: GIIM Note: maturase Location: 948771-948966 bp Feature: domain Description: GIIM Note: maturase Location: 948771 -948966 bp Feature: gene Location: 949952-950476 bp Feature: domain Description: TetR_N Location: 949955-950036 bp Feature: domain Description: TetR_N Location: 949955-950036 bp Feature: domain Description: TetR_C_35 Location: 950105-950438 bp Feature: domain Description: TetR_C_35 Location: 9501 05-950438 bp Feature: gene Location: 950564-951865 bp Feature: domain Description: CypX Location: 950639-951854 bp Feature: domain Description: CypX Location: 950639-951 854 bp Feature: gene Location: 2118104-2118412 bp Feature: domain Description: COG3462 Location: 2118170-2118392 bp Feature: domain Description: COG3462 Location: 21 1 81 70-21 1 8392 bp Feature: gene Location: 2118548-2118697 bp Feature: gene Location: 2119476-2120948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2119818-2120514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 981 8-21 2051 4 bp Feature: domain Description: GIIM Note: maturase Location: 2120583-2120796 bp Feature: domain Description: GIIM Note: maturase Location: 21 20583-21 20796 bp Feature: gene Location: 2122003-2123421 bp Feature: domain Description: NuoN Location: 2122036-2123407 bp Feature: domain Description: NuoN Location: 21 22036-21 23407 bp Feature: gene Location: 2123425-2124915 bp Feature: domain Description: NuoM Location: 2123428-2124904 bp Feature: domain Description: NuoM Location: 21 23428-21 24904 bp Feature: gene Location: 4461011-4461292 bp Feature: domain Description: DUF1490 Location: 4461014-4461272 bp Feature: domain Description: DUF1 490 Location: 4461 01 4-4461 272 bp Feature: gene Location: 4461926-4463764 bp Feature: domain Description: LZ_Tnp_IS481 Location: 4462004-4462178 bp Feature: domain Description: LZ_Tnp_IS481 Location: 4462004-44621 78 bp Feature: domain Description: Tra5 Location: 4462181-4462841 bp Feature: domain Description: Tra5 Location: 44621 81 -4462841 bp Feature: gene Location: 4464371-4465843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4464713-4465409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446471 3-4465409 bp Feature: domain Description: GIIM Note: maturase Location: 4465478-4465697 bp Feature: domain Description: GIIM Note: maturase Location: 4465478-4465697 bp Feature: gene Location: 4466170-4466325 bp Feature: domain Description: AdaB Location: 4466173-4466296 bp Feature: domain Description: AdaB Location: 44661 73-4466296 bp Feature: gene Location: 4466405-4466686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MhpC (COG0596), RVT-GII, GIIM (pfam08388), TetR_N (pfam00440), TetR_C_35 (pfam18556), CypX (COG2124), COG3462 (Uncharacterized membrane protein ), NuoN (COG1007), NuoM (COG1008), DUF1490 (pfam07371)
LZ_Tnp_IS481 (pfam13011), Tra5 (COG2801), AdaB (COG0350)

Seq: LT703506.1 Mycobacterium chimaera strain Mycobacterium chimaera MC045 genome assembly, plasmid: 2 (324321 bp)
Overview 1 RT 1: 63444-68626 bp Neighborhood of RT #1 [63444, 68646] ALDH ALDH_F8_HMSADH RVT_N RVT-GII GIIM DDE_Tnp_1_4 ALDH_F8_HMSADH Feature: gene Location: 63444-63623 bp Feature: domain Description: ALDH Location: 63450-63615 bp Feature: domain Description: ALDH Location: 63450-63615 bp Feature: gene Location: 63630-64313 bp Feature: domain Description: ALDH_F8_HMSADH Location: 63633-64269 bp Feature: domain Description: ALDH_F8_HMSADH Location: 63633-642 69 bp Feature: gene Location: 65035-66795 bp Feature: domain Description: RVT_N Location: 65110-65353 bp Feature: domain Description: RVT_N Location: 65110-65353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65407-66064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65407-66064 bp Feature: domain Description: GIIM Note: maturase Location: 66115-66349 bp Feature: domain Description: GIIM Note: maturase Location: 66115-66349 bp Feature: gene Location: 66896-68293 bp Feature: domain Description: DDE_Tnp_1_4 Location: 66926-68240 bp Feature: domain Description: DDE_Tnp_1_4 Location: 6692 6-682 40 bp Feature: gene Location: 68437-68646 bp Feature: domain Description: ALDH_F8_HMSADH Location: 68440-68626 bp Feature: domain Description: ALDH_F8_HMSADH Location: 68440-6862 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH (cd07078), ALDH_F8_HMSADH (cd07093), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701)

Seq: LT703510.1 Mycobacterium chimaera strain Mycobacterium chimaera MC045 genome assembly, plasmid: 6 (32127 bp)
Overview 1 RT 1: 22388-26884 bp Neighborhood of RT #1 [22388, 26884] HAUS5 RVT-UG23 Feature: gene Location: 22388-22534 bp Feature: gene Location: 23148-23774 bp Feature: domain Description: HAUS5 Location: 23490-23754 bp Feature: domain Description: HAUS5 Location: 23 490-23 754 bp Feature: gene Location: 24173-25717 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 24371-25022 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 243 71-25022 bp Feature: gene Location: 25923-26408 bp Feature: gene Location: 26534-26884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAUS5 (pfam14817), RVT-UG23