myRT

myRT report for GCA_900149875.1_EPEC1

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Seq: LT903847.1 Escherichia coli O127:H6 isolate EPEC1 genome assembly, chromosome: 1 (4792490 bp)
Overview 1 RT 1: 896716-900592 bp 2 RT 2: 3157917-3164928 bp Neighborhood of RT #1 [896716, 900597] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [3157917, 3164928] PRK09726 HipA_Ec_like RVT-Retrons AAA_23 Smc Feature: gene Location: 896716-897432 bp Ori: SNU19460.1 Gene: rph Feature: domain Description: rph Location: 896719-897427 bp Feature: domain Description: rph Location: 89671 9-897427 bp Feature: gene Location: 897498-898139 bp Ori: SNU19461.1 Gene: pyrE Feature: domain Description: pyrE Location: 897501-898134 bp Feature: domain Description: pyrE Location: 897501 -8981 34 bp Feature: gene Location: 898436-899395 bp Ori: SNU19462.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 898571-899120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 898571 -8991 20 bp Feature: gene Location: 899439-900035 bp Ori: SNU19463.1 Gene: slmA Feature: domain Description: slmA Location: 899445-900021 bp Feature: domain Description: slmA Location: 899445-900021 bp Feature: gene Location: 900142-900597 bp Ori: SNU19464.1 Gene: dut Feature: domain Description: dut Location: 900145-900592 bp Feature: domain Description: dut Location: 9001 45-900592 bp Feature: gene Location: 3157917-3158183 bp Ori: SNU21575.1 Gene: hipB Feature: domain Description: PRK09726 Location: 3157920-3158181 bp Feature: domain Description: PRK09726 Location: 31 57920-31 581 81 bp Feature: gene Location: 3158183-3159505 bp Ori: SNU21576.1 Gene: hipA Feature: domain Description: HipA_Ec_like Location: 3158246-3159482 bp Feature: domain Description: HipA_Ec_like Location: 31 58246-31 59482 bp Feature: gene Location: 3160126-3160527 bp Ori: SNU21577.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3160228-3160471 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 60228-31 60471 bp Feature: gene Location: 3161524-3163350 bp Ori: SNU21578.1 Feature: domain Description: AAA_23 Location: 3161578-3162313 bp Feature: domain Description: AAA_23 Location: 31 61 578-31 6231 3 bp Feature: domain Description: Smc Location: 3162559-3162850 bp Feature: domain Description: Smc Location: 31 62559-31 62850 bp Feature: gene Location: 3163828-3164928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), PRK09726 (type II toxin-antitoxin system antitoxin HipB), HipA_Ec_like (cd17808), AAA_23 (pfam13476), Smc (COG1196)