myRT

myRT report for GCA_900186905.1_49923_G01

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Seq: LT906474.1 Escherichia coli strain NCTC122 genome assembly, chromosome: 1 (4625968 bp)
Overview 1 RT 1: 1826815-1832387 bp 2 RT 2: 1893891-1898582 bp 3 RT 3: 2333504-2336362 bp 4 RT 4: 3581582-3583838 bp 5 RT 5: 3613658-3619902 bp 6 RT 6: 4007745-4014138 bp Neighborhood of RT #1 [1826815, 1832398] Pat_hypo_Ecoli_Z1214_like COG3464 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [1893891, 1898656] DUF5503 PHA02517 RVT-GII GIIM HTH_38 Tra8 InsE Neighborhood of RT #3 [2333504, 2336373] RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [3581582, 3583838] RVT-GII GIIM PHA02517 Neighborhood of RT #5 [3613658, 3620003] mhpA PHA02517 RVT-GII GIIM IS285 InsE Neighborhood of RT #6 [4007745, 4014170] PRK10034 FimH_man-bind PRK15220 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1826815-1827885 bp Ori: SNW12769.1 Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 1826842-1827757 bp Feature: domain Description: Pat_hypo_Ecoli_Z1 21 4_like Location: 1 826842-1 827757 bp Feature: gene Location: 1828017-1828874 bp Ori: SNW12770.1 Feature: domain Description: COG3464 Location: 1828026-1828410 bp Feature: domain Description: COG3464 Location: 1 828026-1 82841 0 bp Feature: gene Location: 1829529-1831052 bp Ori: SNW12771.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1829802-1830534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 829802-1 830534 bp Feature: domain Description: GIIM Note: maturase Location: 1830609-1830807 bp Feature: domain Description: GIIM Note: maturase Location: 1 830609-1 830807 bp Feature: gene Location: 1831644-1831883 bp Ori: SNW12772.1 Feature: domain Description: PHA02517 Location: 1831647-1831818 bp Feature: domain Description: PHA0251 7 Location: 1 831 647-1 831 81 8 bp Feature: gene Location: 1832096-1832398 bp Ori: SNW12773.1 Feature: domain Description: InsE Location: 1832105-1832387 bp Feature: domain Description: InsE Location: 1 8321 05-1 832387 bp Feature: gene Location: 1893891-1894019 bp Ori: SNW12828.1 Gene: espR3 Feature: domain Description: DUF5503 Location: 1893894-1893999 bp Feature: domain Description: DUF5503 Location: 1 893894-1 893999 bp Feature: gene Location: 1894016-1894408 bp Ori: SNW12829.1 Feature: domain Description: PHA02517 Location: 1894022-1894400 bp Feature: domain Description: PHA0251 7 Location: 1 894022-1 894400 bp Feature: gene Location: 1894573-1896096 bp Ori: SNW12830.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1894846-1895578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 894846-1 895578 bp Feature: domain Description: GIIM Note: maturase Location: 1895653-1895851 bp Feature: domain Description: GIIM Note: maturase Location: 1 895653-1 895851 bp Feature: gene Location: 1897192-1898343 bp Ori: SNW12831.1 Gene: tra8_2 Feature: domain Description: HTH_38 Location: 1897201-1897315 bp Feature: domain Description: HTH_38 Location: 1 897201 -1 89731 5 bp Feature: domain Description: Tra8 Location: 1897351-1898332 bp Feature: domain Description: Tra8 Location: 1 897351 -1 898332 bp Feature: gene Location: 1898300-1898656 bp Ori: SNW12832.1 Feature: domain Description: InsE Location: 1898312-1898582 bp Feature: domain Description: InsE Location: 1 89831 2-1 898582 bp Feature: gene Location: 2333504-2335027 bp Ori: SNW13424.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2333777-2334509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2333777-2334509 bp Feature: domain Description: GIIM Note: maturase Location: 2334584-2334782 bp Feature: domain Description: GIIM Note: maturase Location: 2334584-2334782 bp Feature: gene Location: 2335619-2335858 bp Ori: SNW13427.1 Feature: domain Description: PHA02517 Location: 2335622-2335793 bp Feature: domain Description: PHA0251 7 Location: 2335622-2335793 bp Feature: gene Location: 2336071-2336373 bp Ori: SNW13429.1 Feature: domain Description: InsE Location: 2336080-2336362 bp Feature: domain Description: InsE Location: 2336080-2336362 bp Feature: gene Location: 3581582-3583105 bp Ori: SNW15282.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3581855-3582587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3581 855-3582587 bp Feature: domain Description: GIIM Note: maturase Location: 3582662-3582860 bp Feature: domain Description: GIIM Note: maturase Location: 3582662-3582860 bp Feature: gene Location: 3583297-3583668 bp Ori: SNW15283.1 Feature: domain Description: PHA02517 Location: 3583300-3583666 bp Feature: domain Description: PHA0251 7 Location: 3583300-3583666 bp Feature: gene Location: 3583671-3583838 bp Feature: gene Location: 3613658-3615019 bp Ori: SNW15316.1 Gene: mhpA_2 Feature: domain Description: mhpA Location: 3613664-3614984 bp Feature: domain Description: mhpA Location: 361 3664-361 4984 bp Feature: gene Location: 3615295-3615534 bp Ori: SNW15317.1 Feature: domain Description: PHA02517 Location: 3615298-3615469 bp Feature: domain Description: PHA0251 7 Location: 361 5298-361 5469 bp Feature: gene Location: 3616126-3617649 bp Ori: SNW15318.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3616399-3617131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 6399-361 71 31 bp Feature: domain Description: GIIM Note: maturase Location: 3617206-3617404 bp Feature: domain Description: GIIM Note: maturase Location: 361 7206-361 7404 bp Feature: gene Location: 3618115-3619413 bp Ori: SNW15319.1 Gene: tnpA Feature: domain Description: IS285 Location: 3618145-3619303 bp Feature: domain Description: IS285 Location: 361 81 45-361 9303 bp Feature: gene Location: 3619740-3620003 bp Ori: SNW15320.1 Feature: domain Description: InsE Location: 3619755-3619902 bp Feature: domain Description: InsE Location: 361 9755-361 9902 bp Feature: gene Location: 4007745-4009088 bp Ori: SNW15677.1 Gene: gntP Feature: domain Description: PRK10034 Location: 4007748-4009086 bp Feature: domain Description: PRK1 0034 Location: 4007748-4009086 bp Feature: gene Location: 4009261-4010163 bp Ori: SNW15678.1 Gene: fimH_2 Feature: domain Description: FimH_man-bind Location: 4009327-4009798 bp Feature: domain Description: FimH_man-bind Location: 4009327-4009798 bp Feature: domain Description: PRK15220 Location: 4009858-4010155 bp Feature: domain Description: PRK1 5220 Location: 4009858-401 01 55 bp Feature: gene Location: 4011718-4013241 bp Ori: SNW15679.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4011991-4012723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 1 991 -401 2723 bp Feature: domain Description: GIIM Note: maturase Location: 4012798-4012996 bp Feature: domain Description: GIIM Note: maturase Location: 401 2798-401 2996 bp Feature: gene Location: 4013433-4013804 bp Ori: SNW15680.1 Feature: domain Description: PHA02517 Location: 4013436-4013802 bp Feature: domain Description: PHA0251 7 Location: 401 3436-401 3802 bp Feature: gene Location: 4013844-4014170 bp Ori: SNW15681.1 Feature: domain Description: InsE Location: 4013853-4014138 bp Feature: domain Description: InsE Location: 401 3853-401 41 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pat_hypo_Ecoli_Z1214_like (cd07209), COG3464 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), DUF5503 (pfam17607), HTH_38 (pfam13936), Tra8 (COG2826), mhpA (PRK06183)
IS285 (COG3328), PRK10034 (gluconate transporter GntP), FimH_man-bind (pfam09160), PRK15220 (fimbrial protein YehD)