myRT

myRT report for GCA_900187175.1_51342_A02

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Seq: LT906459.1 Odoribacter splanchnicus strain NCTC10825 genome assembly, chromosome: 1 (4392177 bp)
Overview 1 RT 1: 255532-260783 bp 2 RT 2: 937298-942924 bp 3 RT 3: 1420007-1426428 bp 4 RT 4: 2246722-2257730 bp Neighborhood of RT #1 [255532, 260812] GldD_lipo GldE RVT-GII Intron_maturas2 ssb IHF Neighborhood of RT #2 [937298, 942924] Dam RVT-DGRs Neighborhood of RT #3 [1420007, 1426436] RVT-GII Intron_maturas2 Phage_int_SAM_5 INTN1_C_like YfeH Neighborhood of RT #4 [2246722, 2257759] DsbC SusD-like_3 SusD_RagB RVT-GII Intron_maturas2 STN OMP_RagA_SusC FecR FecR Feature: gene Location: 255532-255747 bp Ori: SNV25463.1 Feature: domain Description: GldD_lipo Location: 255538-255712 bp Feature: domain Description: GldD_lipo Location: 255538-25571 2 bp Feature: gene Location: 255781-257076 bp Ori: SNV25469.1 Feature: domain Description: GldE Location: 255871-257071 bp Feature: domain Description: GldE Location: 255871 -257071 bp Feature: gene Location: 257540-259348 bp Ori: SNV25474.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257804-258626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257804-258626 bp Feature: domain Description: Intron_maturas2 Location: 258749-259004 bp Feature: domain Description: Intron_maturas2 Location: 258749-259004 bp Feature: gene Location: 259899-260219 bp Ori: SNV25479.1 Gene: ssb Feature: domain Description: ssb Location: 259902-260196 bp Feature: domain Description: ssb Location: 259902-2601 96 bp Feature: gene Location: 260525-260812 bp Ori: SNV25485.1 Feature: domain Description: IHF Location: 260534-260783 bp Feature: domain Description: IHF Location: 260534-260783 bp Feature: gene Location: 937298-938140 bp Ori: SNV28868.1 Gene: dpnM_1 Feature: domain Description: Dam Location: 937301-938069 bp Feature: domain Description: Dam Location: 937301 -938069 bp Feature: gene Location: 938327-938737 bp Feature: gene Location: 938751-940094 bp Ori: SNV28880.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 938958-939618 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 938958-93961 8 bp Feature: gene Location: 940575-942011 bp Feature: gene Location: 942025-942924 bp Feature: gene Location: 1420007-1421128 bp Feature: gene Location: 1421125-1421508 bp Feature: gene Location: 1421840-1423648 bp Ori: SNV31411.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1422104-1422926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4221 04-1 422926 bp Feature: domain Description: Intron_maturas2 Location: 1423049-1423304 bp Feature: domain Description: Intron_maturas2 Location: 1 423049-1 423304 bp Feature: gene Location: 1424199-1425230 bp Ori: SNV31415.1 Gene: xerC_4 Feature: domain Description: Phage_int_SAM_5 Location: 1424382-1424700 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 424382-1 424700 bp Feature: domain Description: INTN1_C_like Location: 1424760-1425213 bp Feature: domain Description: INTN1 _C_like Location: 1 424760-1 42521 3 bp Feature: gene Location: 1425549-1426436 bp Ori: SNV31421.1 Feature: domain Description: YfeH Location: 1425582-1426428 bp Feature: domain Description: YfeH Location: 1 425582-1 426428 bp Feature: gene Location: 2246722-2248650 bp Ori: SNV36307.1 Feature: domain Description: DsbC Location: 2248312-2248636 bp Feature: domain Description: DsbC Location: 224831 2-2248636 bp Feature: gene Location: 2248856-2250400 bp Ori: SNV36316.1 Feature: domain Description: SusD-like_3 Location: 2248928-2249558 bp Feature: domain Description: SusD-like_3 Location: 2248928-2249558 bp Feature: domain Description: SusD_RagB Location: 2249984-2250392 bp Feature: domain Description: SusD_RagB Location: 2249984-2250392 bp Feature: gene Location: 2250653-2252461 bp Ori: SNV36324.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2250917-2251739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225091 7-2251 739 bp Feature: domain Description: Intron_maturas2 Location: 2251862-2252117 bp Feature: domain Description: Intron_maturas2 Location: 2251 862-22521 1 7 bp Feature: gene Location: 2253012-2256500 bp Ori: SNV36333.1 Feature: domain Description: STN Location: 2253225-2253372 bp Feature: domain Description: STN Location: 2253225-2253372 bp Feature: domain Description: OMP_RagA_SusC Location: 2253423-2256480 bp Feature: domain Description: OMP_RagA_SusC Location: 2253423-2256480 bp Feature: gene Location: 2256584-2257759 bp Ori: SNV36340.1 Feature: domain Description: FecR Location: 2256620-2256887 bp Feature: domain Description: FecR Location: 2256620-2256887 bp Feature: domain Description: FecR Location: 2257148-2257730 bp Feature: domain Description: FecR Location: 22571 48-2257730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GldD_lipo (TIGR03512), GldE (TIGR03520), RVT-GII, Intron_maturas2 (pfam01348), ssb (TIGR00621), IHF (cd13832), Dam (pfam05869), RVT-DGRs, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)
YfeH (COG0385), DsbC (pfam11412), SusD-like_3 (pfam14322), SusD_RagB (pfam07980), STN (smart00965), OMP_RagA_SusC (TIGR04056), FecR (pfam04773)