myRT

myRT report for GCA_900187245.1_51470_D02

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Seq: LT906454.1 Streptococcus acidominimus strain NCTC11291 genome assembly, chromosome: 1 (2330811 bp)
Overview 1 RT 1: 187298-192944 bp 2 RT 2: 392553-397960 bp 3 RT 3: 727330-732854 bp 4 RT 4: 1401394-1409800 bp 5 RT 5: 1602095-1608175 bp 6 RT 6: 2072992-2078348 bp Neighborhood of RT #1 [187298, 192973] YesM LytT RVT-GII GIIM PhoE LdcB Neighborhood of RT #2 [392553, 398028] YloU nusB RVT-GII GIIM HTH_LacI PBP1_Qymf_like scrB_fam Neighborhood of RT #3 [727330, 732854] RVT-GII IS5 Neighborhood of RT #4 [1401394, 1409883] COG5340 Peptidase_M23 Phage_lysozyme2 PRK08581 RVT_N RVT-GII GIIM VirB4_CagE PrgI Neighborhood of RT #5 [1602095, 1608180] LolD AcrR TetR_C_8 RVT-GII asnC PRK05764 Neighborhood of RT #6 [2072992, 2078362] hslO nifR3_yhdG RVT-GII GIIM LtrA HTH_Tnp_IS630 Feature: gene Location: 187298-188599 bp Ori: SNV32813.1 Feature: domain Description: YesM Location: 188039-188582 bp Feature: domain Description: YesM Location: 1 88039-1 88582 bp Feature: gene Location: 188596-189345 bp Ori: SNV32821.1 Gene: fasA Feature: domain Description: LytT Location: 188599-189331 bp Feature: domain Description: LytT Location: 1 88599-1 89331 bp Feature: gene Location: 190074-191351 bp Ori: SNV32829.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190278-190893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 90278-1 90893 bp Feature: domain Description: GIIM Note: maturase Location: 190950-191163 bp Feature: domain Description: GIIM Note: maturase Location: 1 90950-1 91 1 63 bp Feature: gene Location: 191515-192216 bp Ori: SNV32837.1 Gene: gpmA_1 Feature: domain Description: PhoE Location: 191527-192193 bp Feature: domain Description: PhoE Location: 1 91 527-1 921 93 bp Feature: gene Location: 192200-192973 bp Ori: SNV32845.1 Feature: domain Description: LdcB Location: 192332-192944 bp Feature: domain Description: LdcB Location: 1 92332-1 92944 bp Feature: gene Location: 392553-392948 bp Ori: SNV34806.1 Feature: domain Description: YloU Location: 392562-392922 bp Feature: domain Description: YloU Location: 392562-392922 bp Feature: gene Location: 392935-393372 bp Ori: SNV34816.1 Gene: nusB Feature: domain Description: nusB Location: 392965-393364 bp Feature: domain Description: nusB Location: 392965-393364 bp Feature: gene Location: 394151-395440 bp Ori: SNV34824.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394355-394982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394355-394982 bp Feature: domain Description: GIIM Note: maturase Location: 395036-395249 bp Feature: domain Description: GIIM Note: maturase Location: 395036-395249 bp Feature: gene Location: 395622-396587 bp Ori: SNV34830.1 Gene: scrR_2 Feature: domain Description: HTH_LacI Location: 395643-395790 bp Feature: domain Description: HTH_LacI Location: 395643-395790 bp Feature: domain Description: PBP1_Qymf_like Location: 395808-396585 bp Feature: domain Description: PBP1 _Qymf_like Location: 395808-396585 bp Feature: gene Location: 396589-398028 bp Ori: SNV34836.1 Gene: scrB Feature: domain Description: scrB_fam Location: 396655-397960 bp Feature: domain Description: scrB_fam Location: 396655-397960 bp Feature: gene Location: 727330-727584 bp Feature: gene Location: 727599-728153 bp Feature: gene Location: 728671-729135 bp Ori: SNV37892.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 728674-729070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 728674-729070 bp Feature: gene Location: 729821-730825 bp Ori: SNV37899.1 Feature: domain Description: IS5 Location: 730016-730802 bp Feature: domain Description: IS5 Location: 73001 6-730802 bp Feature: gene Location: 731670-732854 bp Feature: gene Location: 1401394-1401987 bp Ori: SNV42043.1 Feature: domain Description: COG5340 Location: 1401427-1401889 bp Feature: domain Description: COG5340 Location: 1 401 427-1 401 889 bp Feature: gene Location: 1402109-1404913 bp Ori: SNV42048.1 Feature: domain Description: Peptidase_M23 Location: 1403555-1403759 bp Feature: domain Description: Peptidase_M23 Location: 1 403555-1 403759 bp Feature: domain Description: Phage_lysozyme2 Location: 1403912-1404422 bp Feature: domain Description: Phage_lysozyme2 Location: 1 40391 2-1 404422 bp Feature: domain Description: PRK08581 Location: 1404539-1404872 bp Feature: domain Description: PRK08581 Location: 1 404539-1 404872 bp Feature: gene Location: 1405883-1407556 bp Ori: SNV42053.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 1405955-1406195 bp Feature: domain Description: RVT_N Location: 1 405955-1 4061 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1406243-1406903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 406243-1 406903 bp Feature: domain Description: GIIM Note: maturase Location: 1406972-1407191 bp Feature: domain Description: GIIM Note: maturase Location: 1 406972-1 4071 91 bp Feature: gene Location: 1408086-1409573 bp Ori: SNV42058.1 Feature: domain Description: VirB4_CagE Location: 1408647-1409304 bp Feature: domain Description: VirB4_CagE Location: 1 408647-1 409304 bp Feature: gene Location: 1409530-1409883 bp Ori: SNV42063.1 Feature: domain Description: PrgI Location: 1409542-1409800 bp Feature: domain Description: PrgI Location: 1 409542-1 409800 bp Feature: gene Location: 1602095-1602796 bp Ori: SNV43199.1 Gene: lolD_2 Feature: domain Description: LolD Location: 1602107-1602743 bp Feature: domain Description: LolD Location: 1 6021 07-1 602743 bp Feature: gene Location: 1602944-1603516 bp Ori: SNV43204.1 Feature: domain Description: AcrR Location: 1602962-1603166 bp Feature: domain Description: AcrR Location: 1 602962-1 6031 66 bp Feature: domain Description: TetR_C_8 Location: 1603181-1603475 bp Feature: domain Description: TetR_C_8 Location: 1 6031 81 -1 603475 bp Feature: gene Location: 1603921-1604850 bp Ori: SNV43211.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1604125-1604740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6041 25-1 604740 bp Feature: gene Location: 1605622-1606968 bp Ori: SNV43216.1 Gene: asnC Feature: domain Description: asnC Location: 1605643-1606963 bp Feature: domain Description: asnC Location: 1 605643-1 606963 bp Feature: gene Location: 1607002-1608180 bp Ori: SNV43222.1 Gene: aspB Feature: domain Description: PRK05764 Location: 1607008-1608175 bp Feature: domain Description: PRK05764 Location: 1 607008-1 6081 75 bp Feature: gene Location: 2072992-2073864 bp Ori: SNV46315.1 Gene: hslO Feature: domain Description: hslO Location: 2072995-2073859 bp Feature: domain Description: hslO Location: 2072995-2073859 bp Feature: gene Location: 2073851-2074828 bp Ori: SNV46321.1 Gene: nifR Feature: domain Description: nifR3_yhdG Location: 2073881-2074817 bp Feature: domain Description: nifR3_yhdG Location: 2073881 -207481 7 bp Feature: gene Location: 2074942-2076219 bp Ori: SNV46328.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2075146-2075761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20751 46-2075761 bp Feature: domain Description: GIIM Note: maturase Location: 2075818-2076031 bp Feature: domain Description: GIIM Note: maturase Location: 207581 8-2076031 bp Feature: gene Location: 2076777-2077484 bp Ori: SNV46334.1 Gene: ltrA_7 Feature: domain Description: LtrA Location: 2076792-2077437 bp Feature: domain Description: LtrA Location: 2076792-2077437 bp Feature: gene Location: 2078012-2078362 bp Ori: SNV46341.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2078015-2078348 bp Feature: domain Description: HTH_Tnp_IS630 Location: 207801 5-2078348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), LytT (COG3279), RVT-GII, GIIM (pfam08388), PhoE (COG0406), LdcB (COG1876), YloU (COG1302), nusB (TIGR01951), HTH_LacI (cd01392), PBP1_Qymf_like
scrB_fam (TIGR01322), IS5 (COG3039), COG5340 (Transcriptional regulator, predicted component of viral defense system ), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), RVT_N (pfam13655), VirB4_CagE (TIGR00929), PrgI (pfam12666), LolD (COG1136)
AcrR (COG1309), TetR_C_8 (pfam14278), asnC (PRK03932), PRK05764 (aspartate aminotransferase; Provisional), hslO (PRK01402), nifR3_yhdG (TIGR00737), LtrA (pfam06772), HTH_Tnp_IS630 (pfam01710)