myRT

myRT report for GCA_900209925.1_EH1

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Seq: LT907978.1 [Eubacterium] hallii isolate EH1 genome assembly, chromosome: I (3515670 bp)
Overview 1 RT 1: 644035-651871 bp 2 RT 2: 1620220-1626819 bp 3 RT 3: 1706961-1712890 bp 4 RT 4: 2459008-2462849 bp 5 RT 5: 2688382-2699951 bp 6 RT 6: 2825166-2831433 bp 7 RT 7: 2843181-2850767 bp Neighborhood of RT #1 [644035, 651999] PLDc_N_DEXD_b1 SSL2 DUF3427 RVT-UG2 PHA02517 HTH_Tnp_1 Neighborhood of RT #2 [1620220, 1626819] TraC-F-type RVT-GII VirB4_CagE Neighborhood of RT #3 [1706961, 1712991] TraC-F-type RVT-GII TraC-F-type PrgI Neighborhood of RT #4 [2459008, 2462977] Cas2_I_II_III RVT-CRISPR cas1_HMARI PHA02517 HTH_Tnp_1 Neighborhood of RT #5 [2688382, 2699986] TraC-F-type RVT-GII VirB4_CagE RVT-GII HNHc Maff2 VirD4 VirD4 Neighborhood of RT #6 [2825166, 2831519] TraC-F-type RVT-GII VirB4_CagE PrgI Neighborhood of RT #7 [2843181, 2850826] Maff2 VirD4 RVT-GII RVT-GII VirD4 Feature: gene Location: 644035-644604 bp Feature: gene Location: 645759-648893 bp Ori: SOB71342.1 Feature: domain Description: PLDc_N_DEXD_b1 Location: 646179-646605 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 6461 79-646605 bp Feature: domain Description: SSL2 Location: 646641-647796 bp Feature: domain Description: SSL2 Location: 646641 -647796 bp Feature: domain Description: DUF3427 Location: 648318-648861 bp Feature: domain Description: DUF3427 Location: 64831 8-648861 bp Feature: gene Location: 649313-650605 bp Ori: SOB71343.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 649514-650327 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 64951 4-650327 bp Feature: gene Location: 650844-651701 bp Ori: SOB71344.1 Feature: domain Description: PHA02517 Location: 650994-651666 bp Feature: domain Description: PHA0251 7 Location: 650994-651 666 bp Feature: gene Location: 651652-651999 bp Ori: SOB71345.1 Feature: domain Description: HTH_Tnp_1 Location: 651661-651871 bp Feature: domain Description: HTH_Tnp_1 Location: 651 661 -651 871 bp Feature: gene Location: 1620220-1620330 bp Feature: gene Location: 1620347-1620778 bp Ori: SOB72183.1 Feature: domain Description: TraC-F-type Location: 1620416-1620671 bp Feature: domain Description: TraC-F-type Location: 1 62041 6-1 620671 bp Feature: gene Location: 1620822-1622795 bp Ori: SOB72184.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1621182-1621920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 621 1 82-1 621 920 bp Feature: gene Location: 1623469-1625580 bp Ori: SOB72185.1 Feature: domain Description: VirB4_CagE Location: 1624303-1625476 bp Feature: domain Description: VirB4_CagE Location: 1 624303-1 625476 bp Feature: gene Location: 1625950-1626819 bp Feature: gene Location: 1706961-1707419 bp Feature: gene Location: 1707406-1707873 bp Ori: SOB72271.1 Feature: domain Description: TraC-F-type Location: 1707475-1707733 bp Feature: domain Description: TraC-F-type Location: 1 707475-1 707733 bp Feature: gene Location: 1707917-1709890 bp Ori: SOB72272.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1708277-1709015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 708277-1 70901 5 bp Feature: gene Location: 1710564-1712621 bp Ori: SOB72273.1 Feature: domain Description: TraC-F-type Location: 1710972-1712508 bp Feature: domain Description: TraC-F-type Location: 1 71 0972-1 71 2508 bp Feature: gene Location: 1712602-1712991 bp Ori: SOB72274.1 Feature: domain Description: PrgI Location: 1712620-1712890 bp Feature: domain Description: PrgI Location: 1 71 2620-1 71 2890 bp Feature: gene Location: 2459008-2459370 bp Feature: gene Location: 2459367-2459627 bp Ori: SOB72961.1 Feature: domain Description: Cas2_I_II_III Location: 2459376-2459604 bp Feature: domain Description: Cas2_I_II_III Location: 2459376-2459604 bp Feature: gene Location: 2459654-2461582 bp Ori: SOB72962.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2459894-2460461 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2459894-2460461 bp Feature: domain Description: cas1_HMARI Location: 2460599-2461574 bp Feature: domain Description: cas1 _HMARI Location: 2460599-2461 574 bp Feature: gene Location: 2461822-2462679 bp Ori: SOB72963.1 Feature: domain Description: PHA02517 Location: 2461972-2462644 bp Feature: domain Description: PHA0251 7 Location: 2461 972-2462644 bp Feature: gene Location: 2462630-2462977 bp Ori: SOB72964.1 Feature: domain Description: HTH_Tnp_1 Location: 2462639-2462849 bp Feature: domain Description: HTH_Tnp_1 Location: 2462639-2462849 bp Feature: gene Location: 2688382-2688492 bp Feature: gene Location: 2688509-2688940 bp Ori: SOB73145.1 Feature: domain Description: TraC-F-type Location: 2688578-2688833 bp Feature: domain Description: TraC-F-type Location: 2688578-2688833 bp Feature: gene Location: 2688984-2690957 bp Ori: SOB73146.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2689344-2690082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2689344-2690082 bp Feature: gene Location: 2691631-2693742 bp Ori: SOB73147.1 Feature: domain Description: VirB4_CagE Location: 2692360-2693638 bp Feature: domain Description: VirB4_CagE Location: 2692360-2693638 bp Feature: gene Location: 2694112-2694981 bp Feature: gene Location: 2695241-2697121 bp Ori: SOB73149.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2695568-2696306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2695568-2696306 bp Feature: domain Description: HNHc Note: nucleases Location: 2696855-2697005 bp Feature: domain Description: HNHc Note: nucleases Location: 2696855-2697005 bp Feature: gene Location: 2697847-2697984 bp Ori: SOB73150.1 Feature: domain Description: Maff2 Location: 2697856-2697982 bp Feature: domain Description: Maff2 Location: 2697856-2697982 bp Feature: gene Location: 2698100-2699986 bp Ori: SOB73151.1 Feature: domain Description: VirD4 Location: 2698361-2698718 bp Feature: domain Description: VirD4 Location: 2698361 -269871 8 bp Feature: domain Description: VirD4 Location: 2698817-2699951 bp Feature: domain Description: VirD4 Location: 269881 7-2699951 bp Feature: gene Location: 2825166-2825477 bp Feature: gene Location: 2825571-2826032 bp Ori: SOB73262.1 Feature: domain Description: TraC-F-type Location: 2825637-2825877 bp Feature: domain Description: TraC-F-type Location: 2825637-2825877 bp Feature: gene Location: 2826076-2828049 bp Ori: SOB73263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826436-2827174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826436-28271 74 bp Feature: gene Location: 2828723-2831167 bp Ori: SOB73264.1 Feature: domain Description: VirB4_CagE Location: 2829899-2831144 bp Feature: domain Description: VirB4_CagE Location: 2829899-2831 1 44 bp Feature: gene Location: 2831145-2831519 bp Ori: SOB73265.1 Feature: domain Description: PrgI Location: 2831163-2831433 bp Feature: domain Description: PrgI Location: 2831 1 63-2831 433 bp Feature: gene Location: 2843181-2843339 bp Ori: SOB73279.1 Feature: domain Description: Maff2 Location: 2843184-2843334 bp Feature: domain Description: Maff2 Location: 28431 84-2843334 bp Feature: gene Location: 2843480-2844553 bp Ori: SOB73280.1 Feature: domain Description: VirD4 Location: 2843600-2844383 bp Feature: domain Description: VirD4 Location: 2843600-2844383 bp Feature: gene Location: 2844712-2846619 bp Ori: SOB73281.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845042-2845786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2845042-2845786 bp Feature: gene Location: 2847578-2849395 bp Ori: SOB73282.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2847836-2848577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2847836-2848577 bp Feature: gene Location: 2849607-2849909 bp Feature: gene Location: 2850077-2850826 bp Ori: SOB73284.1 Feature: domain Description: VirD4 Location: 2850341-2850767 bp Feature: domain Description: VirD4 Location: 2850341 -2850767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N_DEXD_b1 (cd09203), SSL2 (COG1061), DUF3427 (pfam11907), RVT-UG2, PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), TraC-F-type (TIGR02746), RVT-GII, VirB4_CagE (TIGR00929), PrgI (pfam12666)
Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_HMARI (TIGR03641), HNHc (smart00507), Maff2 (pfam12750), VirD4 (COG3505)