myRT

myRT report for GCA_900217235.1_DPRO_PRJEB22548_v1

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Seq: LT907975.1 Desulfovibrio profundus strain 500-1 genome assembly, chromosome: DPRO (4168905 bp)
Overview 1 RT 1: 115355-120546 bp 2 RT 2: 1060375-1064835 bp 3 RT 3: 2126886-2131711 bp 4 RT 4: 3336142-3343382 bp Neighborhood of RT #1 [115355, 120563] PHA02517 RVT-Retrons zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 COG3676 COG3676 COG3676 Neighborhood of RT #2 [1060375, 1064954] PHA02517 InsE RVT-Retrons HTH_XRE DUF4096 Neighborhood of RT #3 [2126886, 2131791] DUF3150 RVT-GII vWA_norD_type Neighborhood of RT #4 [3336142, 3343471] HsdM RVT-UG17 IS5 GltS_FMN Feature: gene Location: 115355-116125 bp Ori: SOB56990.1 Feature: domain Description: PHA02517 Location: 115439-116099 bp Feature: domain Description: PHA0251 7 Location: 1 1 5439-1 1 6099 bp Feature: gene Location: 116115-116837 bp Feature: gene Location: 116842-117756 bp Ori: SOB56992.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 116950-117532 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 6950-1 1 7532 bp Feature: gene Location: 118252-119466 bp Ori: SOB56993.1 Feature: domain Description: zf-ISL3 Location: 118366-118498 bp Feature: domain Description: zf-ISL3 Location: 1 1 8366-1 1 8498 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 118528-118663 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 1 8528-1 1 8663 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 118711-119428 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 1 871 1 -1 1 9428 bp Feature: gene Location: 119907-120563 bp Ori: SOB56994.1 Feature: domain Description: COG3676 Location: 119916-120063 bp Feature: domain Description: COG3676 Location: 1 1 991 6-1 20063 bp Feature: domain Description: COG3676 Location: 120099-120351 bp Feature: domain Description: COG3676 Location: 1 20099-1 20351 bp Feature: domain Description: COG3676 Location: 120354-120546 bp Feature: domain Description: COG3676 Location: 1 20354-1 20546 bp Feature: gene Location: 1060375-1061145 bp Ori: SOB57930.1 Feature: domain Description: PHA02517 Location: 1060459-1061119 bp Feature: domain Description: PHA0251 7 Location: 1 060459-1 061 1 1 9 bp Feature: gene Location: 1061217-1061495 bp Ori: SOB57932.1 Feature: domain Description: InsE Location: 1061229-1061460 bp Feature: domain Description: InsE Location: 1 061 229-1 061 460 bp Feature: gene Location: 1062485-1063669 bp Ori: SOB57933.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1062707-1063355 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 062707-1 063355 bp Feature: gene Location: 1063813-1064058 bp Ori: SOB57934.1 Feature: domain Description: HTH_XRE Location: 1063876-1064044 bp Feature: domain Description: HTH_XRE Location: 1 063876-1 064044 bp Feature: gene Location: 1064595-1064954 bp Ori: SOB57935.1 Feature: domain Description: DUF4096 Location: 1064616-1064835 bp Feature: domain Description: DUF4096 Location: 1 06461 6-1 064835 bp Feature: gene Location: 2126886-2127854 bp Ori: SOB58973.1 Feature: domain Description: DUF3150 Location: 2126916-2127675 bp Feature: domain Description: DUF31 50 Location: 21 2691 6-21 27675 bp Feature: gene Location: 2127893-2128063 bp Feature: gene Location: 2128765-2130081 bp Ori: SOB58975.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2129065-2129779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 29065-21 29779 bp Feature: gene Location: 2130006-2130263 bp Feature: gene Location: 2130466-2131791 bp Ori: SOB58977.1 Feature: domain Description: vWA_norD_type Location: 2131264-2131711 bp Feature: domain Description: vWA_norD_type Location: 21 31 264-21 31 71 1 bp Feature: gene Location: 3336142-3337839 bp Ori: SOB60143.1 Feature: domain Description: HsdM Location: 3336220-3337819 bp Feature: domain Description: HsdM Location: 3336220-333781 9 bp Feature: gene Location: 3338318-3339241 bp Feature: gene Location: 3339415-3340506 bp Ori: SOB60145.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3339757-3340357 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 3339757-3340357 bp Feature: gene Location: 3340588-3341622 bp Ori: SOB60146.1 Feature: domain Description: IS5 Location: 3340783-3341617 bp Feature: domain Description: IS5 Location: 3340783-3341 61 7 bp Feature: gene Location: 3341843-3343471 bp Ori: SOB60147.1 Feature: domain Description: GltS_FMN Location: 3341972-3343382 bp Feature: domain Description: GltS_FMN Location: 3341 972-3343382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), COG3676 (Transposase and inactivated derivatives ), InsE (COG2963), HTH_XRE (smart00530), DUF4096 (pfam13340), DUF3150 (pfam11348)
RVT-GII, vWA_norD_type (cd01454), HsdM (COG0286), RVT-UG17, IS5 (COG3039), GltS_FMN (cd02808)