myRT

myRT report for GCA_900232105.1_Kuenenia_stuttgartiensis_MBR1

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Seq: LT934425.1 Candidatus Kuenenia stuttgartiensis isolate kuenenia_mbr1_ru-nijmegen genome assembly, chromosome: Kuenenia_stuttgartiensis_MBR1 (4406153 bp)
Overview 1 RT 1: 43320-52157 bp 2 RT 2: 55471-61022 bp 3 RT 3: 94633-97903 bp 4 RT 4: 199556-204091 bp 5 RT 5: 1193896-1199025 bp 6 RT 6: 2520128-2522650 bp 7 RT 7: 2569455-2576152 bp 8 RT 8: 2914171-2920784 bp 9 RT 9: 2941400-2948979 bp 10 RT 10: 3049059-3053860 bp 11 RT 11: 3348660-3355405 bp 12 RT 12: 3382777-3388910 bp 13 RT 13: 3419521-3424445 bp 14 RT 14: 3753213-3761581 bp 15 RT 15: 4041064-4047250 bp Neighborhood of RT #1 [43320, 52157] AIPR RVT-UG5 zf-CHC2 pepcterm_ATPase RVT-GII Neighborhood of RT #2 [55471, 61075] SkfB RVT-GII DPM_DPG-synthase_like MIase Neighborhood of RT #3 [94633, 97974] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Cas_csx3 Cas_Cas02710 Neighborhood of RT #4 [199556, 204091] YiiM RVT-GII RVT-GII DDE_Tnp_1_4 Neighborhood of RT #5 [1193896, 1199234] DUF2283 DDE_Tnp_ISAZ013 RVT-GII RVT-GII Laminin_G_3 DPM_DPG-synthase_like Methyltransf_23 Neighborhood of RT #6 [2520128, 2522661] RVT-GII RVT-GII group_II_RT_mat COG2442 Neighborhood of RT #7 [2569455, 2576181] UDG_F4_TTUDGA_like FlaC_arch FlaC_arch RVT-GII RVT-GII Elp3 CIMS_like Neighborhood of RT #8 [2914171, 2920981] TolB HZS_alpha PRK03103 RVT-GII PolY_Pol_IV_kappa DDE_Tnp_1 Neighborhood of RT #9 [2941400, 2948999] DDE_Tnp_ISAZ013 RVT-GII PMT_2 DUF3732 Neighborhood of RT #10 [3049059, 3053898] RVT-GII RVT-GII DDE_Tnp_1 rve_3 Neighborhood of RT #11 [3348660, 3355428] leuS RVT-GII NT_KNTase_like GT4_WbaZ-like Neighborhood of RT #12 [3382777, 3389059] FlgD T3SS_Flik_C RVT-GII GIIM CsgG Spc29 Neighborhood of RT #13 [3419521, 3424534] COG3415 DDE_3 RVT-GII GIIM KilA-N Neighborhood of RT #14 [3753213, 3761847] lipoamide_DH DUF4338 Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT-GII DDE_Tnp_1 Neighborhood of RT #15 [4041064, 4047384] DUF4338 DDE_Tnp_1_assoc YhhI DDE_Tnp_ISAZ013 RVT-GII DUF4338 DDE_Tnp_IS66 Feature: gene Location: 43320-43613 bp Feature: gene Location: 43652-44239 bp Ori: SOH02559.1 Feature: domain Description: AIPR Location: 43727-44048 bp Feature: domain Description: AIPR Location: 43727-44048 bp Feature: gene Location: 44247-46082 bp Ori: SOH02560.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44721-45225 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44721 -45225 bp Feature: gene Location: 46099-46401 bp Ori: SOH02561.1 Feature: domain Description: zf-CHC2 Location: 46123-46369 bp Feature: domain Description: zf-CHC2 Location: 461 23-46369 bp Feature: gene Location: 46413-47204 bp Ori: SOH02562.1 Gene: exeA_1 Feature: domain Description: pepcterm_ATPase Location: 46416-47196 bp Feature: domain Description: pepcterm_ATPase Location: 4641 6-471 96 bp Feature: gene Location: 48848-49033 bp Feature: gene Location: 49184-49594 bp Feature: gene Location: 49887-50783 bp Ori: SOH02568.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50100-50721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 00-50721 bp Feature: gene Location: 51411-51821 bp Feature: gene Location: 51972-52157 bp Feature: gene Location: 55471-56478 bp Ori: SOH02578.1 Feature: domain Description: SkfB Location: 55486-56365 bp Feature: domain Description: SkfB Location: 55486-56365 bp Feature: gene Location: 56944-57384 bp Feature: gene Location: 58017-58913 bp Ori: SOH02580.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58230-58851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58230-58851 bp Feature: gene Location: 59655-60401 bp Ori: SOH02581.1 Gene: dpm_1 Feature: domain Description: DPM_DPG-synthase_like Location: 59688-60219 bp Feature: domain Description: DPM_DPG-synthase_like Location: 59688-6021 9 bp Feature: gene Location: 60731-61075 bp Ori: SOH02582.1 Gene: catC Feature: domain Description: MIase Location: 60767-61022 bp Feature: domain Description: MIase Location: 60767-61 022 bp Feature: gene Location: 94633-94908 bp Ori: SOH02619.1 Feature: domain Description: Cas2_I_II_III Location: 94642-94873 bp Feature: domain Description: Cas2_I_II_III Location: 94642-94873 bp Feature: gene Location: 94912-95913 bp Ori: SOH02620.1 Feature: domain Description: Cas1_I-II-III Location: 94921-95875 bp Feature: domain Description: Cas1 _I-II-III Location: 94921 -95875 bp Feature: gene Location: 95895-96839 bp Ori: SOH02621.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 96096-96693 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 96096-96693 bp Feature: gene Location: 96842-97081 bp Ori: SOH02622.1 Feature: domain Description: Cas_csx3 Location: 96947-97070 bp Feature: domain Description: Cas_csx3 Location: 96947-97070 bp Feature: gene Location: 97078-97974 bp Ori: SOH02623.1 Feature: domain Description: Cas_Cas02710 Location: 97789-97903 bp Feature: domain Description: Cas_Cas0271 0 Location: 97789-97903 bp Feature: gene Location: 199556-200023 bp Ori: SOH02722.1 Feature: domain Description: YiiM Location: 199562-200000 bp Feature: domain Description: YiiM Location: 1 99562-200000 bp Feature: gene Location: 200060-200260 bp Feature: gene Location: 201084-201503 bp Ori: SOH02724.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201297-201483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 297-201 483 bp Feature: gene Location: 201448-201981 bp Ori: SOH02725.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201475-201919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 475-201 91 9 bp Feature: gene Location: 202544-203563 bp Ori: SOH02726.1 Feature: domain Description: DDE_Tnp_1_4 Location: 202556-203549 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 202556-203549 bp Feature: gene Location: 203831-204091 bp Feature: gene Location: 1193896-1194105 bp Ori: SOH03608.1 Feature: domain Description: DUF2283 Location: 1193905-1194049 bp Feature: domain Description: DUF2283 Location: 1 1 93905-1 1 94049 bp Feature: gene Location: 1194625-1194816 bp Ori: SOH03609.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 1194628-1194808 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 1 1 94628-1 1 94808 bp Feature: gene Location: 1195585-1196013 bp Ori: SOH03610.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1195798-1195987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 95798-1 1 95987 bp Feature: gene Location: 1196013-1196480 bp Ori: SOH03611.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196019-1196418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9601 9-1 1 9641 8 bp Feature: gene Location: 1196981-1197556 bp Ori: SOH03612.1 Feature: domain Description: Laminin_G_3 Location: 1197029-1197308 bp Feature: domain Description: Laminin_G_3 Location: 1 1 97029-1 1 97308 bp Feature: gene Location: 1197717-1199234 bp Ori: SOH03613.1 Gene: dpm_2 Feature: domain Description: DPM_DPG-synthase_like Location: 1197786-1198344 bp Feature: domain Description: DPM_DPG-synthase_like Location: 1 1 97786-1 1 98344 bp Feature: domain Description: Methyltransf_23 Location: 1198578-1199025 bp Feature: domain Description: Methyltransf_23 Location: 1 1 98578-1 1 99025 bp Feature: gene Location: 2520128-2520298 bp Feature: gene Location: 2520670-2520909 bp Feature: gene Location: 2521153-2521527 bp Ori: SOH04834.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2521321-2521510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2521 321 -2521 51 0 bp Feature: gene Location: 2521571-2521822 bp Ori: SOH04835.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2521577-2521775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2521 577-2521 775 bp Feature: gene Location: 2521833-2522048 bp Ori: SOH04836.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2521875-2522040 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2521 875-2522040 bp Feature: gene Location: 2522545-2522661 bp Ori: SOH04837.1 Feature: domain Description: COG2442 Location: 2522551-2522650 bp Feature: domain Description: COG2442 Location: 2522551 -2522650 bp Feature: gene Location: 2569455-2570246 bp Ori: SOH04879.1 Feature: domain Description: UDG_F4_TTUDGA_like Location: 2569728-2570214 bp Feature: domain Description: UDG_F4_TTUDGA_like Location: 2569728-257021 4 bp Feature: gene Location: 2570632-2571033 bp Ori: SOH04880.1 Feature: domain Description: FlaC_arch Location: 2570776-2570842 bp Feature: domain Description: FlaC_arch Location: 2570776-2570842 bp Feature: domain Description: FlaC_arch Location: 2570890-2571007 bp Feature: domain Description: FlaC_arch Location: 2570890-2571 007 bp Feature: gene Location: 2571630-2572097 bp Ori: SOH04881.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2571636-2572035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2571 636-2572035 bp Feature: gene Location: 2572097-2572537 bp Ori: SOH04882.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2572310-2572496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257231 0-2572496 bp Feature: gene Location: 2573956-2575038 bp Ori: SOH04883.1 Feature: domain Description: Elp3 Location: 2574286-2574670 bp Feature: domain Description: Elp3 Location: 2574286-2574670 bp Feature: gene Location: 2575129-2576181 bp Ori: SOH04884.1 Feature: domain Description: CIMS_like Location: 2575159-2576152 bp Feature: domain Description: CIMS_like Location: 25751 59-25761 52 bp Feature: gene Location: 2914171-2916600 bp Ori: SOH05200.1 Gene: hzsA_1 Feature: domain Description: TolB Location: 2914420-2914654 bp Feature: domain Description: TolB Location: 291 4420-291 4654 bp Feature: domain Description: HZS_alpha Location: 2915623-2915932 bp Feature: domain Description: HZS_alpha Location: 291 5623-291 5932 bp Feature: gene Location: 2916760-2917806 bp Ori: SOH05201.1 Feature: domain Description: PRK03103 Location: 2916826-2917699 bp Feature: domain Description: PRK031 03 Location: 291 6826-291 7699 bp Feature: gene Location: 2918188-2919084 bp Ori: SOH05202.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2918401-2919022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 8401 -291 9022 bp Feature: gene Location: 2919763-2920026 bp Ori: SOH05203.1 Feature: domain Description: PolY_Pol_IV_kappa Location: 2919766-2920015 bp Feature: domain Description: PolY_Pol_IV_kappa Location: 291 9766-292001 5 bp Feature: gene Location: 2920535-2920981 bp Ori: SOH05204.1 Feature: domain Description: DDE_Tnp_1 Location: 2920577-2920784 bp Feature: domain Description: DDE_Tnp_1 Location: 2920577-2920784 bp Feature: gene Location: 2941400-2942161 bp Feature: gene Location: 2942206-2942823 bp Ori: SOH05231.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 2942227-2942821 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 2942227-2942821 bp Feature: gene Location: 2943264-2944160 bp Ori: SOH05232.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2943477-2944098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2943477-2944098 bp Feature: gene Location: 2944793-2946523 bp Ori: SOH05233.1 Feature: domain Description: PMT_2 Location: 2944994-2945429 bp Feature: domain Description: PMT_2 Location: 2944994-2945429 bp Feature: gene Location: 2947014-2948999 bp Ori: SOH05234.1 Feature: domain Description: DUF3732 Location: 2948433-2948979 bp Feature: domain Description: DUF3732 Location: 2948433-2948979 bp Feature: gene Location: 3049059-3049526 bp Ori: SOH05322.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3049065-3049464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3049065-3049464 bp Feature: gene Location: 3049526-3049966 bp Ori: SOH05323.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3049739-3049925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3049739-3049925 bp Feature: gene Location: 3051017-3052120 bp Ori: SOH05324.1 Feature: domain Description: DDE_Tnp_1 Location: 3051497-3052046 bp Feature: domain Description: DDE_Tnp_1 Location: 3051 497-3052046 bp Feature: gene Location: 3053623-3053898 bp Ori: SOH05325.1 Feature: domain Description: rve_3 Location: 3053665-3053860 bp Feature: domain Description: rve_3 Location: 3053665-3053860 bp Feature: gene Location: 3348660-3351161 bp Ori: SOH05601.1 Gene: ileS_2 Feature: domain Description: leuS Location: 3348669-3351159 bp Feature: domain Description: leuS Location: 3348669-3351 1 59 bp Feature: gene Location: 3351436-3351978 bp Feature: gene Location: 3352400-3353296 bp Ori: SOH05603.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352613-3353234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335261 3-3353234 bp Feature: gene Location: 3353929-3354264 bp Ori: SOH05604.1 Feature: domain Description: NT_KNTase_like Location: 3354010-3354208 bp Feature: domain Description: NT_KNTase_like Location: 335401 0-3354208 bp Feature: gene Location: 3354280-3355428 bp Ori: SOH05605.1 Feature: domain Description: GT4_WbaZ-like Location: 3354289-3355405 bp Feature: domain Description: GT4_WbaZ-like Location: 3354289-3355405 bp Feature: gene Location: 3382777-3383190 bp Ori: SOH05635.1 Gene: flgD Feature: domain Description: FlgD Location: 3382792-3383143 bp Feature: domain Description: FlgD Location: 3382792-33831 43 bp Feature: gene Location: 3383202-3385124 bp Ori: SOH05636.1 Gene: fliK Feature: domain Description: T3SS_Flik_C Location: 3384675-3384927 bp Feature: domain Description: T3SS_Flik_C Location: 3384675-3384927 bp Feature: gene Location: 3385903-3387201 bp Ori: SOH05637.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3386218-3386860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338621 8-3386860 bp Feature: domain Description: GIIM Note: maturase Location: 3386941-3387154 bp Feature: domain Description: GIIM Note: maturase Location: 3386941 -33871 54 bp Feature: gene Location: 3387768-3388499 bp Ori: SOH05638.1 Feature: domain Description: CsgG Location: 3388047-3388254 bp Feature: domain Description: CsgG Location: 3388047-3388254 bp Feature: gene Location: 3388538-3389059 bp Ori: SOH05639.1 Feature: domain Description: Spc29 Location: 3388646-3388910 bp Feature: domain Description: Spc29 Location: 3388646-338891 0 bp Feature: gene Location: 3419521-3420558 bp Ori: SOH05673.1 Feature: domain Description: COG3415 Location: 3419578-3419983 bp Feature: domain Description: COG341 5 Location: 341 9578-341 9983 bp Feature: domain Description: DDE_3 Location: 3420025-3420451 bp Feature: domain Description: DDE_3 Location: 3420025-3420451 bp Feature: gene Location: 3420810-3420935 bp Feature: gene Location: 3421521-3422819 bp Ori: SOH05675.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3421836-3422478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3421 836-3422478 bp Feature: domain Description: GIIM Note: maturase Location: 3422559-3422772 bp Feature: domain Description: GIIM Note: maturase Location: 3422559-3422772 bp Feature: gene Location: 3422909-3423958 bp Feature: gene Location: 3424253-3424534 bp Ori: SOH05677.1 Feature: domain Description: KilA-N Location: 3424271-3424445 bp Feature: domain Description: KilA-N Location: 3424271 -3424445 bp Feature: gene Location: 3753213-3754637 bp Ori: SOH05953.1 Gene: pdhD Feature: domain Description: lipoamide_DH Location: 3753237-3754620 bp Feature: domain Description: lipoamide_DH Location: 3753237-3754620 bp Feature: gene Location: 3754952-3756862 bp Ori: SOH05954.1 Feature: domain Description: DUF4338 Location: 3754961-3755435 bp Feature: domain Description: DUF4338 Location: 3754961 -3755435 bp Feature: domain Description: Tnp_DNA_bind Location: 3755495-3755666 bp Feature: domain Description: Tnp_DNA_bind Location: 3755495-3755666 bp Feature: domain Description: DDE_Tnp_1 Location: 3756065-3756563 bp Feature: domain Description: DDE_Tnp_1 Location: 3756065-3756563 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3756575-3756836 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3756575-3756836 bp Feature: gene Location: 3757345-3758241 bp Ori: SOH05955.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3757558-3758179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3757558-37581 79 bp Feature: gene Location: 3758905-3759249 bp Feature: gene Location: 3759973-3761847 bp Ori: SOH05957.1 Feature: domain Description: DDE_Tnp_1 Location: 3760657-3761581 bp Feature: domain Description: DDE_Tnp_1 Location: 3760657-3761 581 bp Feature: gene Location: 4041064-4042446 bp Ori: SOH06213.1 Feature: domain Description: DUF4338 Location: 4041112-4041658 bp Feature: domain Description: DUF4338 Location: 4041 1 1 2-4041 658 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4041742-4042015 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 4041 742-404201 5 bp Feature: domain Description: YhhI Location: 4042150-4042357 bp Feature: domain Description: YhhI Location: 40421 50-4042357 bp Feature: gene Location: 4042507-4042857 bp Ori: SOH06214.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 4042510-4042825 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 404251 0-4042825 bp Feature: gene Location: 4043340-4044236 bp Ori: SOH06215.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4043553-4044174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4043553-40441 74 bp Feature: gene Location: 4045224-4045940 bp Ori: SOH06216.1 Feature: domain Description: DUF4338 Location: 4045254-4045926 bp Feature: domain Description: DUF4338 Location: 4045254-4045926 bp Feature: gene Location: 4045930-4047384 bp Ori: SOH06217.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4046419-4047250 bp Feature: domain Description: DDE_Tnp_IS66 Location: 404641 9-4047250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIPR (pfam10592), RVT-UG5, zf-CHC2 (pfam01807), pepcterm_ATPase (TIGR03015), RVT-GII, SkfB (COG0535), DPM_DPG-synthase_like (cd04179), MIase (pfam02426), Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656)
RVT-CRISPR, Cas_csx3 (pfam09620), Cas_Cas02710 (pfam09670), YiiM (COG2258), DDE_Tnp_1_4 (pfam13701), DUF2283 (pfam10049), DDE_Tnp_ISAZ013 (pfam07592), Laminin_G_3 (pfam13385), Methyltransf_23 (pfam13489), group_II_RT_mat (TIGR04416)
COG2442 (Uncharacterized conserved protein, DUF433 family ), UDG_F4_TTUDGA_like, FlaC_arch (pfam05377), Elp3 (smart00729), CIMS_like (cd03310), TolB (COG0823), HZS_alpha (pfam18582), PRK03103 (DNA polymerase IV; Reviewed), PolY_Pol_IV_kappa (cd03586), DDE_Tnp_1 (pfam01609)
PMT_2 (pfam13231), DUF3732 (pfam12532), rve_3 (pfam13683), leuS (PRK12300), NT_KNTase_like (cd05403), GT4_WbaZ-like (cd03804), FlgD (pfam03963), T3SS_Flik_C (cd17470), GIIM (pfam08388), CsgG (pfam03783)
Spc29 (pfam17082), COG3415 (Transposase ), DDE_3 (pfam13358), KilA-N (pfam04383), lipoamide_DH (TIGR01350), DUF4338 (pfam14236), Tnp_DNA_bind (pfam14706), Dimer_Tnp_Tn5 (pfam02281), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433)
DDE_Tnp_IS66 (pfam03050)