myRT

myRT report for GCA_900233005.1_Vibrio_tapetis_CECT4600

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Seq: LT960612.1 Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600 genome assembly, chromosome: B (1855153 bp) Associated domains: ARS_like (cd16146), dCache_1 (pfam02743), PRK10935 (nitrate/nitrite two-component system sensor histidine kinase NarQ), HDGYP (COG2206), RVT-GII, GIIM (pfam08388), AcrB (COG0841), PBP2_NikA_DppA_OppA_like_14 (cd08497), YejF (COG4172), Peptidases_S8_13 (cd07496)
ChiC_BD (cd12215), TldD (COG0312), PRK01889 (GTPase RsgA; Reviewed), 3a0107s02c (TIGR00974), PRK14253 (phosphate ABC transporter ATP-binding protein; Provisional), BaeS (COG0642), COG4976 (Predicted methyltransferase, contains TPR repeat ), PBP2_HisK (cd13704), UgpB (COG1653), CPT (pfam07931)
PRK01766 (multidrug efflux protein; Reviewed), IscU (COG0822), GGGtGRT (pfam14057), CytC553 (COG2863), KDSR-like_SDR_c (cd08939), TetR_N (pfam00440), TetR_C_7 (pfam14246), RomA-like_MBL-fold (cd16283), HD_3 (pfam13023), PLN02599 (dihydroorotase)
YcbX (COG3217), FNR_iron_sulfur_binding_1 (cd06215), PRK07609 (CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated), nadE (TIGR00552), PRK08887 (nicotinate-nicotinamide nucleotide adenylyltransferase), pntA (TIGR00561), HlyU (pfam10115), ComFB (pfam10719), YdeI (COG4430), COG4067 (Uncharacterized conserved protein )
COG3044 (Predicted ATPase of the ABC class ), UshA (COG0737), PRK07179 (quorum-sensing autoinducer synthase), NtrB (COG3852), PRK15347 (two component system sensor kinase), PRK12440 (acetate/propionate family kinase)

Seq: LT960611.1 Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600 genome assembly, chromosome: A (3788452 bp) Associated domains: PRK08841 (aspartate kinase; Validated), PRK01712 (carbon storage regulator CsrA), RVT-GII, GIIM (pfam08388), PRK03814 (oxaloacetate decarboxylase subunit gamma; Provisional), YkaA (COG1392), PPPi (COG3025), Tar (COG0840), PRK11072 (bifunctional adenylyltransferase), marine_trans_1 (TIGR03644)
OMP_b-brl (pfam13505), PRK05134 (bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG), PRK05560 (DNA gyrase subunit A; Validated), NrfG (COG4235), PRK11160 (cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed), GlcD (COG0277), GlpC (COG0247), RimL (COG1670), STE14 (COG2020), HTH_XRE (smart00530)
Phage_CRI (pfam05144), Phage_X (pfam05155), cls, PRK09028 (cystathionine beta-lyase; Provisional), Tag (COG2818), AcrB (COG0841), SLC6sbd_u1 (cd10334), PRK11089 (PTS system glucose-specific transporter subunits IIBC; Provisional), PRK10812 (putative DNAse; Provisional), rrmJ (TIGR00438)
PRK10343 (ribosome assembly RNA-binding protein YhbY), greA (TIGR01462), FbpB (COG1178), PBP2_FutA1_ilke (cd13542), MukB (pfam04310), MukE (pfam04288), PRK10494 (envelope biogenesis factor ElyC), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), PRK10766 (two-component system response regulator TorR)
TetR_N (pfam00440), TetR_C_22 (pfam17928), kdsB (TIGR00466), PRK11827 (protein YcaR), DUF1887 (pfam09002), OmpC (COG3203), COG5413 (Uncharacterized integral membrane protein ), COG1661 (Predicted DNA-binding protein with PD1-like DNA-binding motif ), TPR (smart00028), TonB (COG0810)
PRK10829 (ribonuclease D; Provisional), PRK08974 (long-chain-fatty-acid--CoA ligase FadD), MhpC (COG0596), IS285 (COG3328), PRK13805 (bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), TPR_19 (pfam14559), RVT-Retrons
COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), HNH_5 (pfam14279), PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), yhaH (COG3152), PRK01269 (tRNA s(4)U8 sulfurtransferase; Provisional), motB (PRK12799), LysR (COG0583), PRK10621 (hypothetical protein; Provisional), carB (PRK12815)
PRK12564 (carbamoyl-phosphate synthase small subunit), cysJ (TIGR01931), OMP_w_GlyGly (TIGR04219), Phageshock_PspG (pfam09583), rpsF (PRK14074), PRK11181 (23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB), PRK11642 (ribonuclease R), COG4327 (Uncharacterized membrane protein ), Na_symport_lg (TIGR03648), RND_mfp (TIGR01730)
PRK09579 (multidrug efflux RND transporter permease subunit), TauC (COG0600), TauB (COG4525), atpC (PRK14736), glmU (TIGR01173), PRK11043 (Bcr/CflA family multidrug efflux MFS transporter), PRK11074 (putative DNA-binding transcriptional regulator; Provisional), COG3495 (Uncharacterized protein, DUF3299 family ), TIGR03899 (TIGR03899 family protein), PRK12735 (elongation factor Tu; Reviewed)