myRT

myRT report for GCA_900235895.1_PL963

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Seq: LT963400.1 Pseudomonas cerasi isolate PL963 genome assembly, plasmid: PP5 (48121 bp)
Overview 1 RT 1: 5-1974 bp Neighborhood of RT #1 [5, 1974] RVT-GII Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 5-370 bp Ori: SOS30454.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-305 bp Feature: gene Location: 483-1691 bp Ori: SOS30455.1 Feature: domain Description: Zn_Tnp_IS91 Location: 546-810 bp Feature: domain Description: Zn_Tnp_IS91 Location: 546-81 0 bp Feature: domain Description: Y2_Tnp Location: 924-1458 bp Feature: domain Description: Y2_Tnp Location: 924-1 458 bp Feature: gene Location: 1693-1974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: LT963395.1 Pseudomonas cerasi isolate PL963 genome assembly, chromosome: 1 (5889419 bp)
Overview 1 RT 1: 6836-14711 bp 2 RT 2: 400663-408907 bp Neighborhood of RT #1 [6836, 14711] COG4889 RVT-Retrons Neighborhood of RT #2 [400663, 408939] PRK14975 RVT-UG9 GMP_PMI GT4_MtfB-like Feature: gene Location: 6836-11734 bp Ori: SOS13744.1 Feature: domain Description: COG4889 Location: 6839-11717 bp Feature: domain Description: COG4889 Location: 6839-11717 bp Feature: gene Location: 12144-12383 bp Feature: gene Location: 12426-13505 bp Ori: SOS13751.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12594-13161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 594-13161 bp Feature: gene Location: 13517-13747 bp Feature: gene Location: 13914-14711 bp Feature: gene Location: 400663-401271 bp Feature: gene Location: 401676-403001 bp Ori: SOS14657.1 Feature: domain Description: PRK14975 Location: 402180-402930 bp Feature: domain Description: PRK14975 Location: 402 180-402 930 bp Feature: gene Location: 403571-405040 bp Ori: SOS14659.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 403958-404594 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 403958-404594 bp Feature: gene Location: 406096-407514 bp Ori: SOS14661.1 Gene: rfbA Feature: domain Description: GMP_PMI Location: 406105-407503 bp Feature: domain Description: GMP_PMI Location: 406105-407503 bp Feature: gene Location: 407791-408939 bp Ori: SOS14663.1 Feature: domain Description: GT4_MtfB-like Location: 407800-408907 bp Feature: domain Description: GT4_MtfB-like Location: 407800-408907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4889 (Predicted helicase ), RVT-Retrons, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9, GMP_PMI (TIGR01479), GT4_MtfB-like (cd03809)