myRT

myRT report for GCA_900243355.1_RW109

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Seq: LT969520.1 Pseudomonas aeruginosa isolate RW109 genome assembly, chromosome: Mainomosome (7049347 bp)
Overview 1 RT 1: 662677-670840 bp 2 RT 2: 2646414-2651874 bp 3 RT 3: 5066989-5071229 bp Neighborhood of RT #1 [662677, 670854] PRK10770 LptD RVT-GII YkfC HNH COG3178 Neighborhood of RT #2 [2646414, 2651874] SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Neighborhood of RT #3 [5066989, 5071657] IS5 RVT_N RVT-GII GIIM IS5 nifL_nitrog Feature: gene Location: 662677-663969 bp Ori: SOV27125.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 662767-663961 bp Feature: domain Description: PRK1 0770 Location: 662767-663961 bp Feature: gene Location: 663950-666721 bp Ori: SOV27126.1 Gene: lptD Feature: domain Description: LptD Location: 664145-666707 bp Feature: domain Description: LptD Location: 6641 45-666707 bp Feature: gene Location: 666854-668164 bp Ori: SOV27127.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666857-667430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666857-667430 bp Feature: domain Description: YkfC Location: 667643-667793 bp Feature: domain Description: YkfC Location: 667643-667793 bp Feature: domain Description: HNH Note: nucleases Location: 667970-668108 bp Feature: domain Description: HNH Note: nucleases Location: 667970-6681 08 bp Feature: gene Location: 669407-669541 bp Feature: gene Location: 669838-670854 bp Ori: SOV27129.1 Feature: domain Description: COG3178 Location: 669841-670840 bp Feature: domain Description: COG31 78 Location: 669841 -670840 bp Feature: gene Location: 2646414-2646620 bp Feature: gene Location: 2646736-2647896 bp Ori: SOV29017.1 Feature: domain Description: SF2_C_SNF Location: 2647336-2647732 bp Feature: domain Description: SF2_C_SNF Location: 2647336-2647732 bp Feature: gene Location: 2648063-2649781 bp Ori: SOV29018.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 2648120-2648357 bp Feature: domain Description: RVT_N Location: 26481 20-2648357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2648408-2649059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2648408-2649059 bp Feature: domain Description: GIIM Note: maturase Location: 2649113-2649344 bp Feature: domain Description: GIIM Note: maturase Location: 26491 1 3-2649344 bp Feature: domain Description: HNHc Note: nucleases Location: 2649578-2649734 bp Feature: domain Description: HNHc Note: nucleases Location: 2649578-2649734 bp Feature: gene Location: 2650378-2651433 bp Ori: SOV29019.1 Feature: domain Description: DEXHc_Snf Location: 2650597-2650858 bp Feature: domain Description: DEXHc_Snf Location: 2650597-2650858 bp Feature: gene Location: 2651569-2651874 bp Feature: gene Location: 5066989-5067969 bp Ori: SOV31255.1 Feature: domain Description: IS5 Location: 5067178-5067943 bp Feature: domain Description: IS5 Location: 50671 78-5067943 bp Feature: gene Location: 5068059-5068670 bp Feature: gene Location: 5068711-5070216 bp Ori: SOV31257.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 5068789-5069023 bp Feature: domain Description: RVT_N Location: 5068789-5069023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5069068-5069710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5069068-506971 0 bp Feature: domain Description: GIIM Note: maturase Location: 5069764-5069995 bp Feature: domain Description: GIIM Note: maturase Location: 5069764-5069995 bp Feature: gene Location: 5070328-5070627 bp Ori: SOV31258.1 Feature: domain Description: IS5 Location: 5070331-5070589 bp Feature: domain Description: IS5 Location: 5070331 -5070589 bp Feature: gene Location: 5070908-5071657 bp Ori: SOV31259.1 Gene: aer_3 Feature: domain Description: nifL_nitrog Location: 5070968-5071229 bp Feature: domain Description: nifL_nitrog Location: 5070968-5071 229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), SF2_C_SNF (cd18793), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)
DEXHc_Snf (cd17919), IS5 (COG3039), nifL_nitrog (TIGR02938)