myRT

myRT report for GCA_900312975.1_PRJEB24953

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Seq: LT990039.1 Mordavella sp. Marseille-P3756 genome assembly, chromosome: contig00001 (2769591 bp)
Overview 1 RT 1: 4947-7469 bp 2 RT 2: 1374124-1377814 bp 3 RT 3: 1554411-1560701 bp 4 RT 4: 1735964-1739578 bp 5 RT 5: 2008890-2014669 bp 6 RT 6: 2589894-2596943 bp Neighborhood of RT #1 [4947, 7469] RVT-DGRs Neighborhood of RT #2 [1374124, 1377814] DUF4367 PRK12446 RVT-GII GIIM group_II_RT_mat Neighborhood of RT #3 [1554411, 1560850] VirD4 VirD4 Maff2 RVT-GII HNHc TrbL TrbL SpoVG Neighborhood of RT #4 [1735964, 1739578] PHA00653 PHA00653 Avd_like RVT-DGRs Neighborhood of RT #5 [2008890, 2014686] GlnQ GlnQ YitT RVT-GII GIIM PBP2_phosphate_like_1 PBP2_phosphate_like_1 PstC Neighborhood of RT #6 [2589894, 2596975] Rotamase_2 DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM MviM pdxA Feature: gene Location: 4947-5561 bp Feature: gene Location: 5575-5733 bp Feature: gene Location: 5870-7060 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6062-6695 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6062-6695 bp Feature: gene Location: 6942-7304 bp Feature: gene Location: 7320-7469 bp Feature: gene Location: 1374124-1374978 bp Feature: domain Description: DUF4367 Location: 1374637-1374967 bp Feature: domain Description: DUF4367 Location: 1 374637-1 374967 bp Feature: gene Location: 1375082-1376146 bp Feature: domain Description: PRK12446 Location: 1375085-1376135 bp Feature: domain Description: PRK1 2446 Location: 1 375085-1 3761 35 bp Feature: gene Location: 1376237-1377244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1376246-1376792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 376246-1 376792 bp Feature: domain Description: GIIM Note: maturase Location: 1376849-1377065 bp Feature: domain Description: GIIM Note: maturase Location: 1 376849-1 377065 bp Feature: gene Location: 1377317-1377628 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1377461-1377626 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 377461 -1 377626 bp Feature: gene Location: 1377674-1377814 bp Feature: gene Location: 1554411-1556255 bp Feature: domain Description: VirD4 Location: 1554666-1554978 bp Feature: domain Description: VirD4 Location: 1 554666-1 554978 bp Feature: domain Description: VirD4 Location: 1555050-1556142 bp Feature: domain Description: VirD4 Location: 1 555050-1 5561 42 bp Feature: gene Location: 1556501-1556632 bp Feature: domain Description: Maff2 Location: 1556504-1556630 bp Feature: domain Description: Maff2 Location: 1 556504-1 556630 bp Feature: gene Location: 1557352-1559238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1557685-1558423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 557685-1 558423 bp Feature: domain Description: HNHc Note: nucleases Location: 1558972-1559122 bp Feature: domain Description: HNHc Note: nucleases Location: 1 558972-1 5591 22 bp Feature: gene Location: 1559496-1560359 bp Feature: domain Description: TrbL Location: 1559517-1559742 bp Feature: domain Description: TrbL Location: 1 55951 7-1 559742 bp Feature: domain Description: TrbL Location: 1559793-1560315 bp Feature: domain Description: TrbL Location: 1 559793-1 56031 5 bp Feature: gene Location: 1560398-1560850 bp Feature: domain Description: SpoVG Location: 1560470-1560701 bp Feature: domain Description: SpoVG Location: 1 560470-1 560701 bp Feature: gene Location: 1735964-1737064 bp Feature: domain Description: PHA00653 Location: 1736087-1736543 bp Feature: domain Description: PHA00653 Location: 1 736087-1 736543 bp Feature: domain Description: PHA00653 Location: 1736582-1737062 bp Feature: domain Description: PHA00653 Location: 1 736582-1 737062 bp Feature: gene Location: 1737118-1737516 bp Feature: domain Description: Avd_like Location: 1737175-1737472 bp Feature: domain Description: Avd_like Location: 1 7371 75-1 737472 bp Feature: gene Location: 1737851-1738903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1738058-1738736 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 738058-1 738736 bp Feature: gene Location: 1738975-1739289 bp Feature: gene Location: 1739345-1739578 bp Feature: gene Location: 2008890-2009678 bp Feature: domain Description: GlnQ Location: 2008896-2009202 bp Feature: domain Description: GlnQ Location: 2008896-2009202 bp Feature: domain Description: GlnQ Location: 2009265-2009673 bp Feature: domain Description: GlnQ Location: 2009265-2009673 bp Feature: gene Location: 2009809-2010705 bp Feature: domain Description: YitT Location: 2009854-2010697 bp Feature: domain Description: YitT Location: 2009854-201 0697 bp Feature: gene Location: 2011223-2012623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2011547-2012171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 1 547-201 21 71 bp Feature: domain Description: GIIM Note: maturase Location: 2012228-2012441 bp Feature: domain Description: GIIM Note: maturase Location: 201 2228-201 2441 bp Feature: gene Location: 2012901-2013809 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 2013030-2013423 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 201 3030-201 3423 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 2013474-2013801 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 201 3474-201 3801 bp Feature: gene Location: 2013811-2014686 bp Feature: domain Description: PstC Location: 2013817-2014669 bp Feature: domain Description: PstC Location: 201 381 7-201 4669 bp Feature: gene Location: 2589894-2590979 bp Feature: domain Description: Rotamase_2 Location: 2590404-2590743 bp Feature: domain Description: Rotamase_2 Location: 2590404-2590743 bp Feature: gene Location: 2591639-2592814 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2591651-2592128 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2591 651 -25921 28 bp Feature: domain Description: Transposase_20 Location: 2592446-2592695 bp Feature: domain Description: Transposase_20 Location: 2592446-2592695 bp Feature: gene Location: 2593077-2594468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2593392-2594016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2593392-259401 6 bp Feature: domain Description: GIIM Note: maturase Location: 2594073-2594286 bp Feature: domain Description: GIIM Note: maturase Location: 2594073-2594286 bp Feature: gene Location: 2594795-2595904 bp Feature: domain Description: MviM Location: 2594798-2595890 bp Feature: domain Description: MviM Location: 2594798-2595890 bp Feature: gene Location: 2595917-2596975 bp Feature: domain Description: pdxA Location: 2595929-2596943 bp Feature: domain Description: pdxA Location: 2595929-2596943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF4367 (pfam14285), PRK12446 (undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), VirD4 (COG3505), Maff2 (pfam12750), HNHc (smart00507), TrbL (pfam04610)
SpoVG (pfam04026), PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), GlnQ (COG1126), YitT (COG1284), PBP2_phosphate_like_1 (cd13653), PstC (COG0573), Rotamase_2 (pfam13145), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)
MviM (COG0673), pdxA (TIGR00557)