myRT

myRT report for GCA_900324035.1_BRAD3257

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Seq: LS398110.1 Bradyrhizobium sp. ORS 3257 isolate ORS3257 genome assembly, chromosome: BRAD3257 (8156021 bp)
Overview 1 RT 1: 816750-821083 bp 2 RT 2: 1089210-1092503 bp 3 RT 3: 1865406-1875272 bp 4 RT 4: 1953595-1958350 bp 5 RT 5: 3054136-3061689 bp 6 RT 6: 6820057-6826565 bp 7 RT 7: 6863031-6869006 bp 8 RT 8: 6894997-6898820 bp 9 RT 9: 7000104-7007031 bp Neighborhood of RT #1 [816750, 821166] HTH_17 RVT-UNC INT_Lambda_C Neighborhood of RT #2 [1089210, 1092511] HTH_34 RVT-UG7 PLN02257 Neighborhood of RT #3 [1865406, 1875277] DLH RVT-GII GIIM Cupin_2 INT_RitA_C_like RVT-GII GIIM COG4584 PRK06526 RVT-GII OMP_b-brl Neighborhood of RT #4 [1953595, 1958529] YybH RVT-GII GIIM PRK09191 PAS PAS sensory_box PRK13560 Neighborhood of RT #5 [3054136, 3061691] DOPA_deC_like RVT-GII RVT-GII RVT-GII GIIM flbT PRK12688 Neighborhood of RT #6 [6820057, 6826648] Carbam_trans_N Carbam_trans_C DDE_Tnp_IS66_C RVT-GII Transposase_mut DUF772 DDE_Tnp_1 Neighborhood of RT #7 [6863031, 6869077] COG3436 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII RVT-GII Transposase_20 PRiA4_ORF3 Neighborhood of RT #8 [6894997, 6898820] DDE_Tnp_IS66 LZ_Tnp_IS66 RVT-GII GIIM RVT-GII TnpB_IS66 Neighborhood of RT #9 [7000104, 7007031] MACS_like_3 AAA_26 RVT-GII ClpS KOG0730 Feature: gene Location: 816750-817466 bp Feature: gene Location: 818125-818463 bp Ori: SPP92004.1 Feature: domain Description: HTH_17 Location: 818272-818407 bp Feature: domain Description: HTH_1 7 Location: 81 8272-81 8407 bp Feature: gene Location: 818503-819741 bp Ori: SPP92005.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 818881-819385 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 81 8881 -81 9385 bp Feature: gene Location: 819872-820048 bp Feature: gene Location: 820051-821166 bp Ori: SPP92007.1 Feature: domain Description: INT_Lambda_C Location: 820651-821083 bp Feature: domain Description: INT_Lambda_C Location: 820651 -821 083 bp Feature: gene Location: 1089210-1089764 bp Feature: gene Location: 1089769-1090068 bp Ori: SPP92279.1 Feature: domain Description: HTH_34 Location: 1089805-1090051 bp Feature: domain Description: HTH_34 Location: 1 089805-1 090051 bp Feature: gene Location: 1089959-1090729 bp Ori: SPP92280.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1090124-1090334 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 0901 24-1 090334 bp Feature: gene Location: 1090990-1091205 bp Feature: gene Location: 1091228-1092511 bp Ori: SPP92282.1 Gene: purD Feature: domain Description: PLN02257 Location: 1091240-1092503 bp Feature: domain Description: PLN02257 Location: 1 091 240-1 092503 bp Feature: gene Location: 1865406-1865921 bp Ori: SPP93120.1 Feature: domain Description: DLH Location: 1865415-1865775 bp Feature: domain Description: DLH Location: 1 86541 5-1 865775 bp Feature: gene Location: 1865875-1866213 bp Feature: gene Location: 1866404-1867735 bp Ori: SPP93122.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866695-1867358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 866695-1 867358 bp Feature: domain Description: GIIM Note: maturase Location: 1867427-1867640 bp Feature: domain Description: GIIM Note: maturase Location: 1 867427-1 867640 bp Feature: gene Location: 1867704-1867907 bp Feature: gene Location: 1868030-1868416 bp Ori: SPP93124.1 Feature: domain Description: Cupin_2 Location: 1868165-1868276 bp Feature: domain Description: Cupin_2 Location: 1 8681 65-1 868276 bp Feature: gene Location: 1869208-1869837 bp Ori: SPP93126.1 Feature: domain Description: INT_RitA_C_like Location: 1869298-1869823 bp Feature: domain Description: INT_RitA_C_like Location: 1 869298-1 869823 bp Feature: gene Location: 1869852-1870151 bp Feature: gene Location: 1870120-1871004 bp Ori: SPP93128.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870144-1870627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8701 44-1 870627 bp Feature: domain Description: GIIM Note: maturase Location: 1870696-1870909 bp Feature: domain Description: GIIM Note: maturase Location: 1 870696-1 870909 bp Feature: gene Location: 1871136-1872509 bp Ori: SPP93129.1 Feature: domain Description: COG4584 Location: 1871148-1871979 bp Feature: domain Description: COG4584 Location: 1 871 1 48-1 871 979 bp Feature: gene Location: 1872391-1873254 bp Ori: SPP93130.1 Feature: domain Description: PRK06526 Location: 1872523-1873150 bp Feature: domain Description: PRK06526 Location: 1 872523-1 8731 50 bp Feature: gene Location: 1873091-1873738 bp Ori: SPP93131.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873382-1873508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 873382-1 873508 bp Feature: gene Location: 1873929-1874357 bp Feature: gene Location: 1874354-1875277 bp Ori: SPP93133.1 Feature: domain Description: OMP_b-brl Location: 1874453-1875272 bp Feature: domain Description: OMP_b-brl Location: 1 874453-1 875272 bp Feature: gene Location: 1953595-1953954 bp Ori: SPP93236.1 Feature: domain Description: YybH Location: 1953616-1953802 bp Feature: domain Description: YybH Location: 1 95361 6-1 953802 bp Feature: gene Location: 1953926-1954261 bp Feature: gene Location: 1954452-1955783 bp Ori: SPP93238.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1954743-1955406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 954743-1 955406 bp Feature: domain Description: GIIM Note: maturase Location: 1955475-1955688 bp Feature: domain Description: GIIM Note: maturase Location: 1 955475-1 955688 bp Feature: gene Location: 1955949-1956353 bp Ori: SPP93239.1 Feature: domain Description: PRK09191 Location: 1955955-1956291 bp Feature: domain Description: PRK091 91 Location: 1 955955-1 956291 bp Feature: gene Location: 1956346-1958529 bp Ori: SPP93240.1 Feature: domain Description: PAS Location: 1956424-1956787 bp Feature: domain Description: PAS Location: 1 956424-1 956787 bp Feature: domain Description: PAS Location: 1956853-1957537 bp Feature: domain Description: PAS Location: 1 956853-1 957537 bp Feature: domain Description: sensory_box Location: 1957558-1957933 bp Feature: domain Description: sensory_box Location: 1 957558-1 957933 bp Feature: domain Description: PRK13560 Location: 1957936-1958350 bp Feature: domain Description: PRK1 3560 Location: 1 957936-1 958350 bp Feature: gene Location: 3054136-3055389 bp Feature: gene Location: 3055386-3056885 bp Ori: SPP94306.1 Feature: domain Description: DOPA_deC_like Location: 3055668-3056814 bp Feature: domain Description: DOPA_deC_like Location: 3055668-305681 4 bp Feature: gene Location: 3057486-3058325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057669-3057762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057669-3057762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057774-3058014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3057774-305801 4 bp Feature: gene Location: 3058024-3058560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3058033-3058129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3058033-30581 29 bp Feature: domain Description: GIIM Note: maturase Location: 3058180-3058357 bp Feature: domain Description: GIIM Note: maturase Location: 30581 80-3058357 bp Feature: gene Location: 3058657-3059097 bp Ori: SPP94309.1 Gene: flbT Feature: domain Description: flbT Location: 3058660-3059050 bp Feature: domain Description: flbT Location: 3058660-3059050 bp Feature: gene Location: 3059421-3061691 bp Ori: SPP94310.1 Feature: domain Description: PRK12688 Location: 3059424-3061689 bp Feature: domain Description: PRK1 2688 Location: 3059424-3061 689 bp Feature: gene Location: 6820057-6821736 bp Ori: SPP98163.1 Gene: nodU Feature: domain Description: Carbam_trans_N Location: 6820063-6821098 bp Feature: domain Description: Carbam_trans_N Location: 6820063-6821 098 bp Feature: domain Description: Carbam_trans_C Location: 6821224-6821671 bp Feature: domain Description: Carbam_trans_C Location: 6821 224-6821 671 bp Feature: gene Location: 6822230-6822376 bp Ori: SPP98164.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 6822242-6822347 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6822242-6822347 bp Feature: gene Location: 6822822-6823976 bp Ori: SPP98165.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6822924-6823611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6822924-682361 1 bp Feature: gene Location: 6824554-6825237 bp Ori: SPP98166.1 Feature: domain Description: Transposase_mut Location: 6824569-6825205 bp Feature: domain Description: Transposase_mut Location: 6824569-6825205 bp Feature: gene Location: 6825299-6826648 bp Ori: SPP98167.1 Feature: domain Description: DUF772 Location: 6825458-6825677 bp Feature: domain Description: DUF772 Location: 6825458-6825677 bp Feature: domain Description: DDE_Tnp_1 Location: 6825893-6826565 bp Feature: domain Description: DDE_Tnp_1 Location: 6825893-6826565 bp Feature: gene Location: 6863031-6863720 bp Ori: SPP98210.1 Feature: domain Description: COG3436 Location: 6863364-6863703 bp Feature: domain Description: COG3436 Location: 6863364-6863703 bp Feature: gene Location: 6863698-6864723 bp Ori: SPP98211.1 Feature: domain Description: DDE_Tnp_IS66 Location: 6863704-6864484 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6863704-6864484 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6864505-6864619 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6864505-686461 9 bp Feature: gene Location: 6865073-6865213 bp Ori: SPP98212.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6865079-6865199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6865079-68651 99 bp Feature: gene Location: 6865363-6865563 bp Ori: SPP98213.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6865411-6865504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686541 1 -6865504 bp Feature: gene Location: 6866518-6866820 bp Ori: SPP98214.1 Feature: domain Description: Transposase_20 Location: 6866524-6866677 bp Feature: domain Description: Transposase_20 Location: 6866524-6866677 bp Feature: gene Location: 6868475-6869077 bp Ori: SPP98215.1 Feature: domain Description: PRiA4_ORF3 Location: 6868496-6869006 bp Feature: domain Description: PRiA4_ORF3 Location: 6868496-6869006 bp Feature: gene Location: 6894997-6895398 bp Ori: SPP98247.1 Feature: domain Description: DDE_Tnp_IS66 Location: 6895075-6895393 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6895075-6895393 bp Feature: gene Location: 6895833-6896213 bp Ori: SPP98248.1 Feature: domain Description: LZ_Tnp_IS66 Location: 6895986-6896166 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6895986-68961 66 bp Feature: gene Location: 6896615-6897370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6896621-6897086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6896621 -6897086 bp Feature: domain Description: GIIM Note: maturase Location: 6897167-6897338 bp Feature: domain Description: GIIM Note: maturase Location: 68971 67-6897338 bp Feature: gene Location: 6897304-6897765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6897514-6897667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689751 4-6897667 bp Feature: gene Location: 6898285-6898488 bp Ori: SPP98251.1 Feature: domain Description: TnpB_IS66 Location: 6898312-6898429 bp Feature: domain Description: TnpB_IS66 Location: 689831 2-6898429 bp Feature: gene Location: 6898485-6898820 bp Feature: gene Location: 7000104-7000700 bp Ori: SPP98349.1 Feature: domain Description: MACS_like_3 Location: 7000107-7000653 bp Feature: domain Description: MACS_like_3 Location: 70001 07-7000653 bp Feature: gene Location: 7001488-7002126 bp Ori: SPP98350.1 Gene: bioD Feature: domain Description: AAA_26 Location: 7001500-7002064 bp Feature: domain Description: AAA_26 Location: 7001 500-7002064 bp Feature: gene Location: 7002884-7004266 bp Ori: SPP98351.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7003211-7003901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700321 1 -7003901 bp Feature: gene Location: 7005094-7006728 bp Ori: SPP98352.1 Feature: domain Description: ClpS Location: 7005157-7005352 bp Feature: domain Description: ClpS Location: 70051 57-7005352 bp Feature: domain Description: KOG0730 Location: 7006063-7006666 bp Feature: domain Description: KOG0730 Location: 7006063-7006666 bp Feature: gene Location: 7006738-7007031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG11/RVT-CRISPR/RVT-GII/RVT-DGRs(RVT-UNC), INT_Lambda_C (cd00800), HTH_34 (pfam13601), RVT-UG7, PLN02257 (phosphoribosylamine--glycine ligase), DLH (pfam01738), RVT-GII, GIIM (pfam08388), Cupin_2 (pfam07883)
INT_RitA_C_like (cd01188), COG4584 (Transposase ), PRK06526 (transposase; Provisional), OMP_b-brl (pfam13505), YybH (COG4319), PRK09191 (two-component response regulator; Provisional), PAS (smart00091), sensory_box (TIGR00229), PRK13560 (hypothetical protein; Provisional), DOPA_deC_like (cd06450)
flbT (PRK12791), PRK12688 (flagellin; Reviewed), Carbam_trans_N (pfam02543), Carbam_trans_C (pfam16861), DDE_Tnp_IS66_C (pfam13817), Transposase_mut (pfam00872), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050)
Transposase_20 (pfam02371), PRiA4_ORF3 (pfam07929), LZ_Tnp_IS66 (pfam13007), TnpB_IS66 (pfam05717), MACS_like_3 (cd05971), AAA_26 (pfam13500), ClpS (pfam02617), KOG0730 (KOG0730, AAA+-type ATPase )