myRT

myRT report for GCA_900327235.1_UT176

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Seq: LS398547.1 Orientia tsutsugamushi isolate UT176 genome assembly, chromosome: I (1932116 bp)
Overview 1 RT 1: 513611-518710 bp 2 RT 2: 671142-675030 bp 3 RT 3: 997647-1005527 bp 4 RT 4: 1094562-1096754 bp 5 RT 5: 1136846-1140829 bp Neighborhood of RT #1 [513611, 518727] HTH_Tnp_IS630 MidA RVT-GII COG3415 Neighborhood of RT #2 [671142, 676316] HTH_Tnp_4 RVT-GII group_II_RT_mat DUF3857 Neighborhood of RT #3 [997647, 1005553] sucA PRK10543 RVT-GII CorB CcmF Neighborhood of RT #4 [1094562, 1096771] ANK SpoT RVT-GII DDE_3 COG3415 Neighborhood of RT #5 [1136846, 1140840] ANK ANK RVT-GII PRK13737 TraC-F-type TraW Feature: gene Location: 513611-514000 bp Ori: SPR04608.1 Feature: domain Description: HTH_Tnp_IS630 Location: 513623-513974 bp Feature: domain Description: HTH_Tnp_IS630 Location: 51 3623-51 3974 bp Feature: gene Location: 514971-516119 bp Ori: SPR04612.1 Feature: domain Description: MidA Location: 514974-516063 bp Feature: domain Description: MidA Location: 51 4974-51 6063 bp Feature: gene Location: 516711-516833 bp Ori: SPR04618.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516717-516831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 671 7-51 6831 bp Feature: gene Location: 517110-517262 bp Feature: gene Location: 518353-518727 bp Ori: SPR04626.1 Feature: domain Description: COG3415 Location: 518356-518710 bp Feature: domain Description: COG341 5 Location: 51 8356-51 871 0 bp Feature: gene Location: 671142-671318 bp Ori: SPR05467.1 Feature: domain Description: HTH_Tnp_4 Location: 671145-671265 bp Feature: domain Description: HTH_Tnp_4 Location: 671 1 45-671 265 bp Feature: gene Location: 671782-671898 bp Feature: gene Location: 672873-673139 bp Ori: SPR05474.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672888-673134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672888-6731 34 bp Feature: gene Location: 673111-673350 bp Ori: SPR05478.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 673123-673336 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6731 23-673336 bp Feature: gene Location: 674388-676316 bp Ori: SPR05482.1 Feature: domain Description: DUF3857 Location: 674532-675030 bp Feature: domain Description: DUF3857 Location: 674532-675030 bp Feature: gene Location: 997647-1000538 bp Ori: SPR07246.1 Feature: domain Description: sucA Location: 997668-1000512 bp Feature: domain Description: sucA Location: 997668-1 00051 2 bp Feature: gene Location: 1000579-1001220 bp Ori: SPR07251.1 Gene: sodB Feature: domain Description: PRK10543 Location: 1000621-1001203 bp Feature: domain Description: PRK1 0543 Location: 1 000621 -1 001 203 bp Feature: gene Location: 1001320-1001454 bp Ori: SPR07256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1001323-1001422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 001 323-1 001 422 bp Feature: gene Location: 1002433-1003701 bp Ori: SPR07261.1 Gene: mgtE Feature: domain Description: CorB Location: 1002451-1003678 bp Feature: domain Description: CorB Location: 1 002451 -1 003678 bp Feature: gene Location: 1003691-1005553 bp Ori: SPR07267.1 Feature: domain Description: CcmF Location: 1003694-1005527 bp Feature: domain Description: CcmF Location: 1 003694-1 005527 bp Feature: gene Location: 1094562-1094873 bp Ori: SPR07836.1 Feature: domain Description: ANK Location: 1094583-1094814 bp Feature: domain Description: ANK Location: 1 094583-1 09481 4 bp Feature: gene Location: 1094911-1095108 bp Ori: SPR07841.1 Feature: domain Description: SpoT Location: 1094929-1095091 bp Feature: domain Description: SpoT Location: 1 094929-1 095091 bp Feature: gene Location: 1095441-1095815 bp Ori: SPR07846.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1095444-1095813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 095444-1 09581 3 bp Feature: gene Location: 1095904-1096410 bp Ori: SPR07853.1 Feature: domain Description: DDE_3 Location: 1095958-1096375 bp Feature: domain Description: DDE_3 Location: 1 095958-1 096375 bp Feature: gene Location: 1096397-1096771 bp Ori: SPR07857.1 Feature: domain Description: COG3415 Location: 1096400-1096754 bp Feature: domain Description: COG341 5 Location: 1 096400-1 096754 bp Feature: gene Location: 1136846-1137532 bp Ori: SPR08076.1 Gene: ank13 Feature: domain Description: ANK Location: 1136891-1137125 bp Feature: domain Description: ANK Location: 1 1 36891 -1 1 371 25 bp Feature: domain Description: ANK Location: 1137254-1137488 bp Feature: domain Description: ANK Location: 1 1 37254-1 1 37488 bp Feature: gene Location: 1138010-1139071 bp Feature: gene Location: 1139261-1139536 bp Ori: SPR08086.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139270-1139534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 39270-1 1 39534 bp Feature: gene Location: 1139666-1140100 bp Ori: SPR08092.1 Gene: TrbL/VirB6|trbG/virB9 Feature: domain Description: PRK13737 Location: 1139672-1140092 bp Feature: domain Description: PRK1 3737 Location: 1 1 39672-1 1 40092 bp Feature: gene Location: 1140526-1140840 bp Ori: SPR08099.1 Gene: traW Feature: domain Description: TraC-F-type Location: 1140532-1140658 bp Feature: domain Description: TraC-F-type Location: 1 1 40532-1 1 40658 bp Feature: domain Description: TraW Location: 1140679-1140829 bp Feature: domain Description: TraW Location: 1 1 40679-1 1 40829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), MidA (COG1565), RVT-GII, COG3415 (Transposase ), HTH_Tnp_4 (pfam13613), group_II_RT_mat (TIGR04416), DUF3857 (pfam12969), sucA (PRK09404), PRK10543 (superoxide dismutase ), CorB (COG4536)
CcmF (COG1138), ANK (smart00248), SpoT (COG0317), DDE_3 (pfam13358), PRK13737 (conjugal transfer pilus assembly protein TraU; Provisional), TraC-F-type (TIGR02746), TraW (TIGR02743)