myRT

myRT report for GCA_900327245.1_Gilliam

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Seq: LS398551.1 Orientia tsutsugamushi str. Gilliam genome assembly, chromosome: I (2465012 bp)
Overview 1 RT 1: 23680-27626 bp 2 RT 2: 254511-257361 bp 3 RT 3: 526838-530569 bp 4 RT 4: 691361-694538 bp 5 RT 5: 849294-857177 bp 6 RT 6: 1403757-1407517 bp 7 RT 7: 1898085-1901837 bp 8 RT 8: 2018456-2024076 bp 9 RT 9: 2048862-2051659 bp 10 RT 10: 2260558-2263496 bp 11 RT 11: 2433627-2436004 bp Neighborhood of RT #1 [23680, 27820] TraA_Ti TraA_Ti RVT_N RVT-GII TraD Neighborhood of RT #2 [254511, 257361] HTH_XRE GIIM RVT-GII Neighborhood of RT #3 [526838, 530569] Peptidase_S66 RVT-GII Neighborhood of RT #4 [691361, 694591] RVT-GII GstA Neighborhood of RT #5 [849294, 857203] sucA SodA RVT-GII CorB CcmF Neighborhood of RT #6 [1403757, 1407552] ANK ANK RVT-GII COG3415 DDE_3 Neighborhood of RT #7 [1898085, 1901944] ANK ANK RVT-GII RVT-GII Arm-DNA-bind_3 INT_Rci_Hp1_C Neighborhood of RT #8 [2018456, 2024099] DUF3857 group_II_RT_mat RVT-GII ANK Neighborhood of RT #9 [2048862, 2051659] ANK RVT-GII GIIM Neighborhood of RT #10 [2260558, 2263531] MidA RVT-GII DDE_3 Neighborhood of RT #11 [2433627, 2436018] PRK08159 RVT-GII DDE_Tnp_1_3 Feature: gene Location: 23680-24501 bp Ori: SPR02211.1 Gene: traA Feature: domain Description: TraA_Ti Location: 23692-24412 bp Feature: domain Description: TraA_Ti Location: 23692-2441 2 bp Feature: gene Location: 24538-24858 bp Ori: SPR02215.1 Gene: traA Feature: domain Description: TraA_Ti Location: 24559-24841 bp Feature: domain Description: TraA_Ti Location: 24559-24841 bp Feature: gene Location: 25580-26527 bp Ori: SPR02220.1 Feature: domain Description: RVT_N Location: 25586-25745 bp Feature: domain Description: RVT_N Location: 25586-25745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25793-26438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25793-26438 bp Feature: gene Location: 26781-26945 bp Feature: gene Location: 27365-27820 bp Ori: SPR02229.1 Feature: domain Description: TraD Location: 27449-27626 bp Feature: domain Description: TraD Location: 27449-27626 bp Feature: gene Location: 254511-254951 bp Ori: SPR03237.1 Feature: domain Description: HTH_XRE Location: 254577-254745 bp Feature: domain Description: HTH_XRE Location: 254577-254745 bp Feature: gene Location: 255212-255469 bp Ori: SPR03241.1 Feature: domain Description: GIIM Note: maturase Location: 255236-255401 bp Feature: domain Description: GIIM Note: maturase Location: 255236-255401 bp Feature: gene Location: 255521-256540 bp Ori: SPR03244.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255806-256493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255806-256493 bp Feature: gene Location: 256725-256877 bp Feature: gene Location: 257080-257361 bp Feature: gene Location: 526838-527611 bp Feature: gene Location: 527959-528957 bp Ori: SPR04113.1 Feature: domain Description: Peptidase_S66 Location: 528037-528886 bp Feature: domain Description: Peptidase_S66 Location: 528037-528886 bp Feature: gene Location: 529817-530056 bp Ori: SPR04115.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529829-530051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529829-530051 bp Feature: gene Location: 530058-530204 bp Feature: gene Location: 530465-530569 bp Feature: gene Location: 691361-691642 bp Feature: gene Location: 691845-691997 bp Feature: gene Location: 692182-693201 bp Ori: SPR04673.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692467-693154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692467-6931 54 bp Feature: gene Location: 693219-693347 bp Feature: gene Location: 693923-694591 bp Ori: SPR04680.1 Gene: gst Feature: domain Description: GstA Location: 693932-694538 bp Feature: domain Description: GstA Location: 693932-694538 bp Feature: gene Location: 849294-852185 bp Ori: SPR05207.1 Feature: domain Description: sucA Location: 849315-852159 bp Feature: domain Description: sucA Location: 84931 5-8521 59 bp Feature: gene Location: 852226-852867 bp Ori: SPR05211.1 Gene: sodB Feature: domain Description: SodA Location: 852265-852859 bp Feature: domain Description: SodA Location: 852265-852859 bp Feature: gene Location: 852952-853137 bp Ori: SPR05214.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852955-853108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852955-8531 08 bp Feature: gene Location: 854083-855351 bp Ori: SPR05217.1 Gene: mgtE Feature: domain Description: CorB Location: 854101-855328 bp Feature: domain Description: CorB Location: 8541 01 -855328 bp Feature: gene Location: 855341-857203 bp Ori: SPR05221.1 Feature: domain Description: CcmF Location: 855344-857177 bp Feature: domain Description: CcmF Location: 855344-8571 77 bp Feature: gene Location: 1403757-1404443 bp Ori: SPR07772.1 Gene: ank13 Feature: domain Description: ANK Location: 1403802-1404036 bp Feature: domain Description: ANK Location: 1 403802-1 404036 bp Feature: domain Description: ANK Location: 1404168-1404399 bp Feature: domain Description: ANK Location: 1 4041 68-1 404399 bp Feature: gene Location: 1404921-1405979 bp Feature: gene Location: 1406345-1406500 bp Ori: SPR07780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1406405-1406495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 406405-1 406495 bp Feature: gene Location: 1407033-1407308 bp Ori: SPR07785.1 Feature: domain Description: COG3415 Location: 1407036-1407288 bp Feature: domain Description: COG341 5 Location: 1 407036-1 407288 bp Feature: gene Location: 1407322-1407552 bp Ori: SPR07790.1 Feature: domain Description: DDE_3 Location: 1407334-1407517 bp Feature: domain Description: DDE_3 Location: 1 407334-1 40751 7 bp Feature: gene Location: 1898085-1898729 bp Ori: SPR10576.1 Feature: domain Description: ANK Location: 1898112-1898331 bp Feature: domain Description: ANK Location: 1 8981 1 2-1 898331 bp Feature: domain Description: ANK Location: 1898388-1898703 bp Feature: domain Description: ANK Location: 1 898388-1 898703 bp Feature: gene Location: 1898777-1898950 bp Feature: gene Location: 1899244-1899618 bp Ori: SPR10586.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1899247-1899451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 899247-1 899451 bp Feature: gene Location: 1899714-1900262 bp Ori: SPR10591.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1899879-1900257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 899879-1 900257 bp Feature: gene Location: 1900377-1900577 bp Feature: gene Location: 1900706-1901944 bp Ori: SPR10601.1 Feature: domain Description: Arm-DNA-bind_3 Location: 1900808-1901009 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 900808-1 901 009 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1901369-1901837 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 901 369-1 901 837 bp Feature: gene Location: 2018456-2020384 bp Ori: SPR11149.1 Feature: domain Description: DUF3857 Location: 2018600-2019098 bp Feature: domain Description: DUF3857 Location: 201 8600-201 9098 bp Feature: gene Location: 2021428-2021667 bp Ori: SPR11153.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2021440-2021653 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2021 440-2021 653 bp Feature: gene Location: 2021639-2021893 bp Ori: SPR11158.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2021651-2021888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2021 651 -2021 888 bp Feature: gene Location: 2023081-2023218 bp Feature: gene Location: 2023860-2024099 bp Ori: SPR11169.1 Feature: domain Description: ANK Location: 2023899-2024076 bp Feature: domain Description: ANK Location: 2023899-2024076 bp Feature: gene Location: 2048862-2049038 bp Ori: SPR11338.1 Feature: domain Description: ANK Location: 2048868-2049015 bp Feature: domain Description: ANK Location: 2048868-204901 5 bp Feature: gene Location: 2049273-2049425 bp Feature: gene Location: 2049610-2050629 bp Ori: SPR11348.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2049895-2050582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2049895-2050582 bp Feature: gene Location: 2050681-2050938 bp Ori: SPR11352.1 Feature: domain Description: GIIM Note: maturase Location: 2050705-2050870 bp Feature: domain Description: GIIM Note: maturase Location: 2050705-2050870 bp Feature: gene Location: 2051528-2051659 bp Feature: gene Location: 2260558-2261712 bp Ori: SPR12510.1 Feature: domain Description: MidA Location: 2260561-2261650 bp Feature: domain Description: MidA Location: 2260561 -2261 650 bp Feature: gene Location: 2262152-2262274 bp Feature: gene Location: 2262300-2262422 bp Ori: SPR12518.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2262306-2262420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2262306-2262420 bp Feature: gene Location: 2262699-2262851 bp Feature: gene Location: 2263025-2263531 bp Ori: SPR12526.1 Feature: domain Description: DDE_3 Location: 2263079-2263496 bp Feature: domain Description: DDE_3 Location: 2263079-2263496 bp Feature: gene Location: 2433627-2434424 bp Ori: SPR13182.1 Gene: fabI Feature: domain Description: PRK08159 Location: 2433654-2434416 bp Feature: domain Description: PRK081 59 Location: 2433654-243441 6 bp Feature: gene Location: 2434562-2434753 bp Feature: gene Location: 2434841-2435107 bp Ori: SPR13187.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2434964-2435102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2434964-24351 02 bp Feature: gene Location: 2435521-2435658 bp Feature: gene Location: 2435839-2436018 bp Ori: SPR13193.1 Feature: domain Description: DDE_Tnp_1_3 Location: 2435878-2436004 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 2435878-2436004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraA_Ti (TIGR02768), RVT_N (pfam13655), RVT-GII, TraD (pfam06412), HTH_XRE (smart00530), GIIM (pfam08388), Peptidase_S66 (pfam02016), GstA (COG0625), sucA (PRK09404), SodA (COG0605)
CorB (COG4536), CcmF (COG1138), ANK (smart00248), COG3415 (Transposase ), DDE_3 (pfam13358), Arm-DNA-bind_3 (pfam13356), INT_Rci_Hp1_C (cd00796), DUF3857 (pfam12969), group_II_RT_mat (TIGR04416), MidA (COG1565)
PRK08159 (enoyl- reductase FabI), DDE_Tnp_1_3 (pfam13612)