myRT

myRT report for GCA_900327255.1_UT76

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Seq: LS398552.1 Orientia tsutsugamushi isolate UT76 genome assembly, chromosome: I (2078193 bp)
Overview 1 RT 1: 25706-30210 bp 2 RT 2: 65000-68393 bp 3 RT 3: 626143-630845 bp 4 RT 4: 632933-637601 bp 5 RT 5: 898143-903778 bp 6 RT 6: 1097804-1105682 bp 7 RT 7: 1244642-1247896 bp 8 RT 8: 1746096-1750130 bp Neighborhood of RT #1 [25706, 30210] YfdV TRX_reduct RVT-GII DDE_Tnp_1_3 Neighborhood of RT #2 [65000, 68393] RVT-GII ANK ANK Neighborhood of RT #3 [626143, 630845] MviN RVT-GII Lipase_3 Neighborhood of RT #4 [632933, 637750] PRK09165 RVT_N RVT-GII GIIM HNHc TraD Neighborhood of RT #5 [898143, 903840] PRK08159 RVT-GII TrwB_AAD_bind MidA Neighborhood of RT #6 [1097804, 1105735] sucA PRK10543 RVT-GII CorB CcmF Neighborhood of RT #7 [1244642, 1247898] ANK ANK SpoT RVT-GII PRK14341 Neighborhood of RT #8 [1746096, 1751413] HTH_Tnp_4 RVT-GII group_II_RT_mat DUF3857 Feature: gene Location: 25706-26629 bp Ori: SPR02304.1 Feature: domain Description: YfdV Location: 25718-26618 bp Feature: domain Description: YfdV Location: 2571 8-2661 8 bp Feature: gene Location: 26759-27721 bp Ori: SPR02311.1 Gene: trxB Feature: domain Description: TRX_reduct Location: 26786-27707 bp Feature: domain Description: TRX_reduct Location: 26786-27707 bp Feature: gene Location: 28416-29435 bp Ori: SPR02317.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28581-29265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28581 -29265 bp Feature: gene Location: 29475-29870 bp Ori: SPR02322.1 Feature: domain Description: DDE_Tnp_1_3 Location: 29478-29763 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 29478-29763 bp Feature: gene Location: 30079-30210 bp Feature: gene Location: 65000-65254 bp Feature: gene Location: 66423-66680 bp Feature: gene Location: 66771-66989 bp Ori: SPR02692.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66777-66927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66777-66927 bp Feature: gene Location: 67348-68211 bp Ori: SPR02697.1 Gene: ank19 Feature: domain Description: ANK Location: 67354-67675 bp Feature: domain Description: ANK Location: 67354-67675 bp Feature: domain Description: ANK Location: 67720-68032 bp Feature: domain Description: ANK Location: 67720-68032 bp Feature: gene Location: 68229-68393 bp Feature: gene Location: 626143-627657 bp Ori: SPR05484.1 Gene: murJ Feature: domain Description: MviN Location: 626149-627634 bp Feature: domain Description: MviN Location: 6261 49-627634 bp Feature: gene Location: 627694-628074 bp Feature: gene Location: 628244-628483 bp Ori: SPR05493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628256-628478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628256-628478 bp Feature: gene Location: 629249-630442 bp Ori: SPR05496.1 Feature: domain Description: Lipase_3 Location: 629576-629744 bp Feature: domain Description: Lipase_3 Location: 629576-629744 bp Feature: gene Location: 630744-630845 bp Feature: gene Location: 632933-633064 bp Ori: SPR05518.1 Gene: dnaB Feature: domain Description: PRK09165 Location: 632942-633059 bp Feature: domain Description: PRK091 65 Location: 632942-633059 bp Feature: gene Location: 633078-634784 bp Feature: gene Location: 635415-636638 bp Ori: SPR05527.1 Feature: domain Description: RVT_N Location: 635472-635718 bp Feature: domain Description: RVT_N Location: 635472-63571 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635766-636411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635766-63641 1 bp Feature: domain Description: GIIM Note: maturase Location: 636483-636633 bp Feature: domain Description: GIIM Note: maturase Location: 636483-636633 bp Feature: gene Location: 636639-637130 bp Ori: SPR05531.1 Feature: domain Description: HNHc Note: nucleases Location: 636906-637071 bp Feature: domain Description: HNHc Note: nucleases Location: 636906-637071 bp Feature: gene Location: 637340-637750 bp Ori: SPR05536.1 Feature: domain Description: TraD Location: 637424-637601 bp Feature: domain Description: TraD Location: 637424-637601 bp Feature: gene Location: 898143-898940 bp Ori: SPR06849.1 Gene: fabI Feature: domain Description: PRK08159 Location: 898170-898932 bp Feature: domain Description: PRK081 59 Location: 8981 70-898932 bp Feature: gene Location: 899144-899269 bp Feature: gene Location: 899359-899526 bp Ori: SPR06858.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899386-899521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 899386-899521 bp Feature: gene Location: 900941-901234 bp Ori: SPR06862.1 Feature: domain Description: TrwB_AAD_bind Location: 901079-901232 bp Feature: domain Description: TrwB_AAD_bind Location: 901 079-901 232 bp Feature: gene Location: 902686-903840 bp Ori: SPR06866.1 Feature: domain Description: MidA Location: 902689-903778 bp Feature: domain Description: MidA Location: 902689-903778 bp Feature: gene Location: 1097804-1100695 bp Ori: SPR07929.1 Feature: domain Description: sucA Location: 1097825-1100669 bp Feature: domain Description: sucA Location: 1 097825-1 1 00669 bp Feature: gene Location: 1100736-1101377 bp Ori: SPR07934.1 Gene: sodB Feature: domain Description: PRK10543 Location: 1100778-1101360 bp Feature: domain Description: PRK1 0543 Location: 1 1 00778-1 1 01 360 bp Feature: gene Location: 1101477-1101647 bp Ori: SPR07939.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101480-1101630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 01 480-1 1 01 630 bp Feature: gene Location: 1102591-1103859 bp Ori: SPR07944.1 Gene: mgtE Feature: domain Description: CorB Location: 1102609-1103836 bp Feature: domain Description: CorB Location: 1 1 02609-1 1 03836 bp Feature: gene Location: 1103849-1105735 bp Ori: SPR07948.1 Feature: domain Description: CcmF Location: 1103852-1105682 bp Feature: domain Description: CcmF Location: 1 1 03852-1 1 05682 bp Feature: gene Location: 1244642-1245286 bp Ori: SPR08707.1 Feature: domain Description: ANK Location: 1244669-1244903 bp Feature: domain Description: ANK Location: 1 244669-1 244903 bp Feature: domain Description: ANK Location: 1244945-1245260 bp Feature: domain Description: ANK Location: 1 244945-1 245260 bp Feature: gene Location: 1245324-1245521 bp Ori: SPR08712.1 Feature: domain Description: SpoT Location: 1245342-1245504 bp Feature: domain Description: SpoT Location: 1 245342-1 245504 bp Feature: gene Location: 1245917-1246228 bp Ori: SPR08719.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1245920-1246226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 245920-1 246226 bp Feature: gene Location: 1246328-1246489 bp Feature: gene Location: 1247272-1247898 bp Ori: SPR08729.1 Gene: lplB Feature: domain Description: PRK14341 Location: 1247275-1247896 bp Feature: domain Description: PRK1 4341 Location: 1 247275-1 247896 bp Feature: gene Location: 1746096-1746452 bp Ori: SPR11361.1 Feature: domain Description: HTH_Tnp_4 Location: 1746135-1746285 bp Feature: domain Description: HTH_Tnp_4 Location: 1 7461 35-1 746285 bp Feature: gene Location: 1746462-1746557 bp Feature: gene Location: 1747973-1748239 bp Ori: SPR11369.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1747988-1748234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 747988-1 748234 bp Feature: gene Location: 1748211-1748450 bp Ori: SPR11375.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1748223-1748436 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 748223-1 748436 bp Feature: gene Location: 1749485-1751413 bp Ori: SPR11380.1 Feature: domain Description: DUF3857 Location: 1749629-1750130 bp Feature: domain Description: DUF3857 Location: 1 749629-1 7501 30 bp Sorry, your browser 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Associated domains:myRT YfdV (COG0679), TRX_reduct (TIGR01292), RVT-GII, DDE_Tnp_1_3 (pfam13612), ANK (smart00248), MviN (COG0728), Lipase_3 (pfam01764), PRK09165 (replicative DNA helicase; Provisional), RVT_N (pfam13655), GIIM (pfam08388)
HNHc (smart00507), TraD (pfam06412), PRK08159 (enoyl- reductase FabI), TrwB_AAD_bind (pfam10412), MidA (COG1565), sucA (PRK09404), PRK10543 (superoxide dismutase ), CorB (COG4536), CcmF (COG1138), SpoT (COG0317)
PRK14341 (lipoyl(octanoyl) transferase LipB), HTH_Tnp_4 (pfam13613), group_II_RT_mat (TIGR04416), DUF3857 (pfam12969)