myRT

myRT report for GCA_900377405.1_TA686

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Seq: LS398549.1 Orientia tsutsugamushi isolate TA686 genome assembly, chromosome: I (2254553 bp)
Overview 1 RT 1: 44706-47286 bp 2 RT 2: 70810-74783 bp 3 RT 3: 136721-143169 bp 4 RT 4: 227668-234631 bp 5 RT 5: 279245-285452 bp 6 RT 6: 313880-316202 bp 7 RT 7: 337553-340349 bp 8 RT 8: 380366-384909 bp 9 RT 9: 392925-397911 bp 10 RT 10: 471346-475495 bp 11 RT 11: 534773-538635 bp 12 RT 12: 544253-546698 bp 13 RT 13: 607485-610127 bp 14 RT 14: 696699-698249 bp 15 RT 15: 815331-818977 bp 16 RT 16: 912499-915289 bp 17 RT 17: 933174-936475 bp 18 RT 18: 942700-946849 bp 19 RT 19: 969969-972894 bp 20 RT 20: 1056932-1059779 bp 21 RT 21: 1365912-1368702 bp 22 RT 22: 1370781-1374190 bp 23 RT 23: 1416919-1419800 bp 24 RT 24: 1526625-1529966 bp 25 RT 25: 1589499-1592677 bp 26 RT 26: 1635581-1640461 bp 27 RT 27: 1711803-1713639 bp 28 RT 28: 1760537-1763586 bp 29 RT 29: 1815101-1820782 bp 30 RT 30: 2013765-2015037 bp 31 RT 31: 2061192-2067012 bp 32 RT 32: 2156849-2160998 bp 33 RT 33: 2204984-2209267 bp Neighborhood of RT #1 [44706, 47345] ETC_C1_NDUFA4 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [70810, 74827] DDE_Tnp_1 DDE_Tnp_4 RVT-GII ANK ANK Neighborhood of RT #3 [136721, 143174] UDG_fam4 RVT-GII RVT-GII RVT-GII DnaA_N PRK09165 Neighborhood of RT #4 [227668, 234639] rnc COG3547 RVT-GII HTH_Tnp_4 RVT-GII rbfA infB Neighborhood of RT #5 [279245, 285487] CorB RVT-GII COG3547 RVT-GII DDE_Tnp_1_3 Neighborhood of RT #6 [313880, 316303] COG3415 RVT-GII DDE_Tnp_1_3 DDE_Tnp_1_3 Neighborhood of RT #7 [337553, 340349] AtpF ATP-synt_Fo_b RVT-GII RVT-GII Neighborhood of RT #8 [380366, 384909] PgsA RVT-GII COG3415 Neighborhood of RT #9 [392925, 397911] Autotransporter COG3547 RVT-GII RVT-GII HNHc Neighborhood of RT #10 [471346, 475506] TraE RVT-GII INT_P4_C Arm-DNA-bind_3 Phage_int_SAM_5 INT_Rci_Hp1_C Neighborhood of RT #11 [534773, 538691] HTH_Tnp_4 DDE_Tnp_4 RVT-GII Vut_1 COG3415 Neighborhood of RT #12 [544253, 546757] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #13 [607485, 610141] HNHc RVT-GII GIIM RVT_N TraA_Ti Neighborhood of RT #14 [696699, 698249] DDE_Tnp_1_3 RVT-GII HTH_Tnp_IS630 Neighborhood of RT #15 [815331, 819036] TraA_Ti TraA_Ti RVT_N RVT-GII GIIM HNHc Neighborhood of RT #16 [912499, 915348] TraA_Ti RVT_N RVT-GII GIIM HNHc Neighborhood of RT #17 [933174, 936477] TraD HNHc RVT-GII GIIM RVT_N ETC_C1_NDUFA4 Neighborhood of RT #18 [942700, 946860] Arm-DNA-bind_3 Phage_int_SAM_5 INT_Rci_Hp1_C INT_P4_C RVT-GII TraE Neighborhood of RT #19 [969969, 973001] TraD HNHc RVT-GII GIIM RVT_N MobA_MobL Neighborhood of RT #20 [1056932, 1059781] HNHc RVT-GII GIIM RVT_N TraA_Ti Neighborhood of RT #21 [1365912, 1368761] TraA_Ti RVT_N RVT-GII GIIM HNHc Neighborhood of RT #22 [1370781, 1374190] spoT_relA RVT-GII Arm-DNA-bind_3 XerC Neighborhood of RT #23 [1416919, 1419817] HTH_Tnp_4 RVT-GII COG3547 RVT_N Neighborhood of RT #24 [1526625, 1529966] KOG4767 RVT-GII HTH_Tnp_4 Neighborhood of RT #25 [1589499, 1592694] HTH_Tnp_4 DDE_Tnp_1_3 RVT-GII COG3547 RVT_N Neighborhood of RT #26 [1635581, 1640472] DnaA_N RVT-GII TraI_TIGR Transposase_31 YadD Neighborhood of RT #27 [1711803, 1713701] RVT-GII COG3415 DDE_3 HTH_Tnp_IS630 Neighborhood of RT #28 [1760537, 1763594] DDE_3 RVT-GII GIIM DDE_Tnp_1_3 PRK09362 Neighborhood of RT #29 [1815101, 1820784] Autotransporter RVT-GII clpP HTH_Tnp_4 Neighborhood of RT #30 [2013765, 2015037] PRK09165 RVT-GII GIIM Neighborhood of RT #31 [2061192, 2067012] HNHc RVT-GII GIIM RVT_N RVT-GII HTH_Tnp_4 Neighborhood of RT #32 [2156849, 2161009] Arm-DNA-bind_3 Phage_int_SAM_5 INT_Rci_Hp1_C INT_P4_C RVT-GII TraE Neighborhood of RT #33 [2204984, 2209302] HTH_Tnp_4 RVT-GII TraI_TIGR Transposase_31 Transposase_31 YadD Feature: gene Location: 44706-44987 bp Ori: SPR02452.1 Feature: domain Description: ETC_C1_NDUFA4 Location: 44712-44985 bp Feature: domain Description: ETC_C1 _NDUFA4 Location: 4471 2-44985 bp Feature: gene Location: 45630-45950 bp Ori: SPR02456.1 Feature: domain Description: RVT_N Location: 45687-45933 bp Feature: domain Description: RVT_N Location: 45687-45933 bp Feature: gene Location: 45972-46853 bp Ori: SPR02460.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45981-46626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45981 -46626 bp Feature: domain Description: GIIM Note: maturase Location: 46698-46848 bp Feature: domain Description: GIIM Note: maturase Location: 46698-46848 bp Feature: gene Location: 46854-47000 bp Feature: gene Location: 47106-47345 bp Ori: SPR02467.1 Feature: domain Description: HNHc Note: nucleases Location: 47121-47286 bp Feature: domain Description: HNHc Note: nucleases Location: 471 21 -47286 bp Feature: gene Location: 70810-71031 bp Ori: SPR02575.1 Feature: domain Description: DDE_Tnp_1 Location: 70813-70975 bp Feature: domain Description: DDE_Tnp_1 Location: 7081 3-70975 bp Feature: gene Location: 71499-71708 bp Ori: SPR02579.1 Feature: domain Description: DDE_Tnp_4 Location: 71538-71649 bp Feature: domain Description: DDE_Tnp_4 Location: 71 538-71 649 bp Feature: gene Location: 72046-72357 bp Ori: SPR02583.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72142-72280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721 42-72280 bp Feature: gene Location: 72605-73663 bp Feature: gene Location: 74141-74827 bp Ori: SPR02595.1 Gene: ank13 Feature: domain Description: ANK Location: 74180-74420 bp Feature: domain Description: ANK Location: 741 80-74420 bp Feature: domain Description: ANK Location: 74552-74783 bp Feature: domain Description: ANK Location: 74552-74783 bp Feature: gene Location: 136721-136897 bp Feature: gene Location: 137420-138226 bp Ori: SPR05631.1 Gene: ung Feature: domain Description: UDG_fam4 Location: 137687-138203 bp Feature: domain Description: UDG_fam4 Location: 1 37687-1 38203 bp Feature: gene Location: 138715-138900 bp Ori: SPR05638.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138754-138889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 38754-1 38889 bp Feature: gene Location: 138911-139174 bp Ori: SPR05757.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138920-139094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 38920-1 39094 bp Feature: gene Location: 139161-139379 bp Ori: SPR05812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139242-139371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 39242-1 39371 bp Feature: gene Location: 140008-141717 bp Ori: SPR05850.1 Feature: domain Description: DnaA_N Location: 141472-141664 bp Feature: domain Description: DnaA_N Location: 1 41 472-1 41 664 bp Feature: gene Location: 141726-143174 bp Ori: SPR05854.1 Gene: dnaB Feature: domain Description: PRK09165 Location: 141735-143169 bp Feature: domain Description: PRK091 65 Location: 1 41 735-1 431 69 bp Feature: gene Location: 227668-228414 bp Ori: SPR06460.1 Gene: rnc Feature: domain Description: rnc Location: 227728-228388 bp Feature: domain Description: rnc Location: 227728-228388 bp Feature: gene Location: 228681-229595 bp Ori: SPR06464.1 Feature: domain Description: COG3547 Location: 228693-229509 bp Feature: domain Description: COG3547 Location: 228693-229509 bp Feature: gene Location: 229867-230223 bp Ori: SPR06468.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229930-230209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229930-230209 bp Feature: gene Location: 230269-230778 bp Ori: SPR06473.1 Feature: domain Description: HTH_Tnp_4 Location: 230410-230551 bp Feature: domain Description: HTH_Tnp_4 Location: 23041 0-230551 bp Feature: gene Location: 231064-231192 bp Feature: gene Location: 231243-231365 bp Ori: SPR06485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231249-231360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 249-231 360 bp Feature: gene Location: 231706-232068 bp Ori: SPR06490.1 Gene: rbfA Feature: domain Description: rbfA Location: 231727-232063 bp Feature: domain Description: rbfA Location: 231 727-232063 bp Feature: gene Location: 232099-234639 bp Ori: SPR06495.1 Gene: infB Feature: domain Description: infB Location: 232360-234631 bp Feature: domain Description: infB Location: 232360-234631 bp Feature: gene Location: 279245-280513 bp Ori: SPR06784.1 Gene: mgtE Feature: domain Description: CorB Location: 279263-280490 bp Feature: domain Description: CorB Location: 279263-280490 bp Feature: gene Location: 281406-281522 bp Feature: gene Location: 281665-281937 bp Ori: SPR06791.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281746-281920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 746-281 920 bp Feature: gene Location: 281972-282934 bp Ori: SPR06799.1 Feature: domain Description: COG3547 Location: 281984-282800 bp Feature: domain Description: COG3547 Location: 281 984-282800 bp Feature: gene Location: 283185-283850 bp Ori: SPR06803.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283248-283848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283248-283848 bp Feature: gene Location: 283851-283976 bp Feature: gene Location: 285284-285487 bp Ori: SPR06813.1 Feature: domain Description: DDE_Tnp_1_3 Location: 285290-285452 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 285290-285452 bp Feature: gene Location: 313880-314074 bp Ori: SPR06944.1 Feature: domain Description: COG3415 Location: 313910-314054 bp Feature: domain Description: COG341 5 Location: 31 391 0-31 4054 bp Feature: gene Location: 314147-314275 bp Feature: gene Location: 314235-314588 bp Ori: SPR06953.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 314298-314532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 4298-31 4532 bp Feature: gene Location: 314741-315616 bp Ori: SPR06958.1 Feature: domain Description: DDE_Tnp_1_3 Location: 315050-315509 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 31 5050-31 5509 bp Feature: gene Location: 315728-316303 bp Ori: SPR06963.1 Feature: domain Description: DDE_Tnp_1_3 Location: 315743-316202 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 31 5743-31 6202 bp Feature: gene Location: 337553-338050 bp Ori: SPR07101.1 Gene: atpF Feature: domain Description: AtpF Location: 337586-338006 bp Feature: domain Description: AtpF Location: 337586-338006 bp Feature: gene Location: 338063-338530 bp Ori: SPR07106.1 Gene: atpF Feature: domain Description: ATP-synt_Fo_b Location: 338072-338447 bp Feature: domain Description: ATP-synt_Fo_b Location: 338072-338447 bp Feature: gene Location: 338874-339059 bp Ori: SPR07111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338913-339048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33891 3-339048 bp Feature: gene Location: 339070-339540 bp Ori: SPR07115.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339151-339460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3391 51 -339460 bp Feature: gene Location: 339497-339610 bp Feature: gene Location: 340182-340349 bp Feature: gene Location: 380366-380626 bp Feature: gene Location: 381433-381981 bp Ori: SPR07381.1 Gene: pgsA Feature: domain Description: PgsA Location: 381448-381973 bp Feature: domain Description: PgsA Location: 381 448-381 973 bp Feature: gene Location: 383504-383689 bp Ori: SPR07386.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383549-383660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383549-383660 bp Feature: gene Location: 384514-384750 bp Ori: SPR07391.1 Feature: domain Description: COG3415 Location: 384517-384733 bp Feature: domain Description: COG341 5 Location: 38451 7-384733 bp Feature: gene Location: 384745-384909 bp Feature: gene Location: 392925-395258 bp Ori: SPR07445.1 Gene: ScaD Feature: domain Description: Autotransporter Location: 394455-395196 bp Feature: domain Description: Autotransporter Location: 394455-3951 96 bp Feature: gene Location: 395832-396794 bp Ori: SPR07450.1 Feature: domain Description: COG3547 Location: 395844-396753 bp Feature: domain Description: COG3547 Location: 395844-396753 bp Feature: gene Location: 396844-397062 bp Ori: SPR07455.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396850-397045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396850-397045 bp Feature: gene Location: 397007-397243 bp Ori: SPR07460.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397022-397211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397022-39721 1 bp Feature: gene Location: 397420-397611 bp Ori: SPR07465.1 Gene: cas9 Feature: domain Description: HNHc Note: nucleases Location: 397462-397606 bp Feature: domain Description: HNHc Note: nucleases Location: 397462-397606 bp Feature: gene Location: 397777-397911 bp Feature: gene Location: 471346-471738 bp Ori: SPR07787.1 Feature: domain Description: TraE Location: 471349-471727 bp Feature: domain Description: TraE Location: 471 349-471 727 bp Feature: gene Location: 471738-472061 bp Feature: gene Location: 472380-473519 bp Ori: SPR07799.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472665-473349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472665-473349 bp Feature: gene Location: 474123-474464 bp Ori: SPR07802.1 Feature: domain Description: INT_P4_C Location: 474129-474354 bp Feature: domain Description: INT_P4_C Location: 4741 29-474354 bp Feature: gene Location: 474631-475506 bp Ori: SPR07807.1 Feature: domain Description: Arm-DNA-bind_3 Location: 474733-474934 bp Feature: domain Description: Arm-DNA-bind_3 Location: 474733-474934 bp Feature: domain Description: Phage_int_SAM_5 Location: 474934-475258 bp Feature: domain Description: Phage_int_SAM_5 Location: 474934-475258 bp Feature: domain Description: INT_Rci_Hp1_C Location: 475294-475495 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 475294-475495 bp Feature: gene Location: 534773-534952 bp Ori: SPR08119.1 Feature: domain Description: HTH_Tnp_4 Location: 534833-534914 bp Feature: domain Description: HTH_Tnp_4 Location: 534833-53491 4 bp Feature: gene Location: 535253-535489 bp Ori: SPR08124.1 Feature: domain Description: DDE_Tnp_4 Location: 535256-535454 bp Feature: domain Description: DDE_Tnp_4 Location: 535256-535454 bp Feature: gene Location: 535600-536448 bp Ori: SPR08129.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535663-536347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535663-536347 bp Feature: gene Location: 537389-538057 bp Ori: SPR08133.1 Feature: domain Description: Vut_1 Location: 537539-538019 bp Feature: domain Description: Vut_1 Location: 537539-53801 9 bp Feature: gene Location: 538290-538691 bp Ori: SPR08138.1 Feature: domain Description: COG3415 Location: 538296-538635 bp Feature: domain Description: COG341 5 Location: 538296-538635 bp Feature: gene Location: 544253-544369 bp Feature: gene Location: 545042-545362 bp Ori: SPR08181.1 Feature: domain Description: RVT_N Location: 545099-545345 bp Feature: domain Description: RVT_N Location: 545099-545345 bp Feature: gene Location: 545384-546265 bp Ori: SPR08186.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545393-546038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545393-546038 bp Feature: domain Description: GIIM Note: maturase Location: 546110-546260 bp Feature: domain Description: GIIM Note: maturase Location: 5461 1 0-546260 bp Feature: gene Location: 546266-546412 bp Feature: gene Location: 546518-546757 bp Ori: SPR08198.1 Feature: domain Description: HNHc Note: nucleases Location: 546533-546698 bp Feature: domain Description: HNHc Note: nucleases Location: 546533-546698 bp Feature: gene Location: 607485-607724 bp Ori: SPR08597.1 Feature: domain Description: HNHc Note: nucleases Location: 607500-607665 bp Feature: domain Description: HNHc Note: nucleases Location: 607500-607665 bp Feature: gene Location: 607830-607976 bp Feature: gene Location: 607977-608858 bp Ori: SPR08605.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607986-608631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607986-608631 bp Feature: domain Description: GIIM Note: maturase Location: 608703-608853 bp Feature: domain Description: GIIM Note: maturase Location: 608703-608853 bp Feature: gene Location: 608880-609200 bp Ori: SPR08611.1 Feature: domain Description: RVT_N Location: 608937-609183 bp Feature: domain Description: RVT_N Location: 608937-6091 83 bp Feature: gene Location: 609872-610141 bp Ori: SPR08614.1 Gene: traA Feature: domain Description: TraA_Ti Location: 609893-610127 bp Feature: domain Description: TraA_Ti Location: 609893-61 01 27 bp Feature: gene Location: 696699-696977 bp Feature: gene Location: 696986-697567 bp Ori: SPR09007.1 Feature: domain Description: DDE_Tnp_1_3 Location: 697001-697460 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 697001 -697460 bp Feature: gene Location: 697629-697874 bp Ori: SPR09012.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697635-697848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697635-697848 bp Feature: gene Location: 697923-698063 bp Ori: SPR09017.1 Feature: domain Description: HTH_Tnp_IS630 Location: 697938-698043 bp Feature: domain Description: HTH_Tnp_IS630 Location: 697938-698043 bp Feature: gene Location: 698079-698249 bp Feature: gene Location: 815331-816218 bp Ori: SPR09596.1 Gene: traA Feature: domain Description: TraA_Ti Location: 815355-816177 bp Feature: domain Description: TraA_Ti Location: 81 5355-81 61 77 bp Feature: gene Location: 816187-816648 bp Ori: SPR09601.1 Gene: traA Feature: domain Description: TraA_Ti Location: 816208-816646 bp Feature: domain Description: TraA_Ti Location: 81 6208-81 6646 bp Feature: gene Location: 817321-818544 bp Ori: SPR09607.1 Feature: domain Description: RVT_N Location: 817378-817624 bp Feature: domain Description: RVT_N Location: 81 7378-81 7624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 817672-818317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 7672-81 831 7 bp Feature: domain Description: GIIM Note: maturase Location: 818389-818539 bp Feature: domain Description: GIIM Note: maturase Location: 81 8389-81 8539 bp Feature: gene Location: 818545-818691 bp Feature: gene Location: 818797-819036 bp Ori: SPR09615.1 Feature: domain Description: HNHc Note: nucleases Location: 818812-818977 bp Feature: domain Description: HNHc Note: nucleases Location: 81 881 2-81 8977 bp Feature: gene Location: 912499-912960 bp Ori: SPR10165.1 Gene: traA Feature: domain Description: TraA_Ti Location: 912520-912958 bp Feature: domain Description: TraA_Ti Location: 91 2520-91 2958 bp Feature: gene Location: 913633-913953 bp Ori: SPR10170.1 Feature: domain Description: RVT_N Location: 913690-913936 bp Feature: domain Description: RVT_N Location: 91 3690-91 3936 bp Feature: gene Location: 913975-914856 bp Ori: SPR10175.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913984-914629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 3984-91 4629 bp Feature: domain Description: GIIM Note: maturase Location: 914701-914851 bp Feature: domain Description: GIIM Note: maturase Location: 91 4701 -91 4851 bp Feature: gene Location: 914857-915003 bp Feature: gene Location: 915109-915348 bp Ori: SPR10186.1 Feature: domain Description: HNHc Note: nucleases Location: 915124-915289 bp Feature: domain Description: HNHc Note: nucleases Location: 91 51 24-91 5289 bp Feature: gene Location: 933174-933629 bp Ori: SPR10306.1 Feature: domain Description: TraD Location: 933258-933435 bp Feature: domain Description: TraD Location: 933258-933435 bp Feature: gene Location: 933838-934329 bp Ori: SPR10311.1 Feature: domain Description: HNHc Note: nucleases Location: 934105-934270 bp Feature: domain Description: HNHc Note: nucleases Location: 9341 05-934270 bp Feature: gene Location: 934330-935211 bp Ori: SPR10316.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934339-934984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934339-934984 bp Feature: domain Description: GIIM Note: maturase Location: 935056-935206 bp Feature: domain Description: GIIM Note: maturase Location: 935056-935206 bp Feature: gene Location: 935233-935553 bp Ori: SPR10320.1 Feature: domain Description: RVT_N Location: 935290-935536 bp Feature: domain Description: RVT_N Location: 935290-935536 bp Feature: gene Location: 936196-936477 bp Ori: SPR10324.1 Feature: domain Description: ETC_C1_NDUFA4 Location: 936202-936475 bp Feature: domain Description: ETC_C1 _NDUFA4 Location: 936202-936475 bp Feature: gene Location: 942700-943575 bp Ori: SPR10376.1 Feature: domain Description: Arm-DNA-bind_3 Location: 942802-943003 bp Feature: domain Description: Arm-DNA-bind_3 Location: 942802-943003 bp Feature: domain Description: Phage_int_SAM_5 Location: 943003-943327 bp Feature: domain Description: Phage_int_SAM_5 Location: 943003-943327 bp Feature: domain Description: INT_Rci_Hp1_C Location: 943363-943564 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 943363-943564 bp Feature: gene Location: 943742-944083 bp Ori: SPR10381.1 Feature: domain Description: INT_P4_C Location: 943748-943973 bp Feature: domain Description: INT_P4_C Location: 943748-943973 bp Feature: gene Location: 944687-945826 bp Ori: SPR10385.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944972-945656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944972-945656 bp Feature: gene Location: 946145-946468 bp Feature: gene Location: 946468-946860 bp Ori: SPR10393.1 Feature: domain Description: TraE Location: 946471-946849 bp Feature: domain Description: TraE Location: 946471 -946849 bp Feature: gene Location: 969969-970325 bp Ori: SPR10545.1 Feature: domain Description: TraD Location: 970053-970230 bp Feature: domain Description: TraD Location: 970053-970230 bp Feature: gene Location: 970533-971024 bp Ori: SPR10548.1 Feature: domain Description: HNHc Note: nucleases Location: 970800-970965 bp Feature: domain Description: HNHc Note: nucleases Location: 970800-970965 bp Feature: gene Location: 971025-971906 bp Ori: SPR10552.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971034-971679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971 034-971 679 bp Feature: domain Description: GIIM Note: maturase Location: 971751-971901 bp Feature: domain Description: GIIM Note: maturase Location: 971 751 -971 901 bp Feature: gene Location: 971928-972248 bp Ori: SPR10557.1 Feature: domain Description: RVT_N Location: 971985-972231 bp Feature: domain Description: RVT_N Location: 971 985-972231 bp Feature: gene Location: 972672-973001 bp Ori: SPR10562.1 Gene: traA Feature: domain Description: MobA_MobL Location: 972681-972894 bp Feature: domain Description: MobA_MobL Location: 972681 -972894 bp Feature: gene Location: 1056932-1057171 bp Ori: SPR11024.1 Feature: domain Description: HNHc Note: nucleases Location: 1056947-1057112 bp Feature: domain Description: HNHc Note: nucleases Location: 1 056947-1 0571 1 2 bp Feature: gene Location: 1057277-1057423 bp Feature: gene Location: 1057424-1058305 bp Ori: SPR11033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057433-1058078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 057433-1 058078 bp Feature: domain Description: GIIM Note: maturase Location: 1058150-1058300 bp Feature: domain Description: GIIM Note: maturase Location: 1 0581 50-1 058300 bp Feature: gene Location: 1058327-1058647 bp Ori: SPR11036.1 Feature: domain Description: RVT_N Location: 1058384-1058630 bp Feature: domain Description: RVT_N Location: 1 058384-1 058630 bp Feature: gene Location: 1059320-1059781 bp Ori: SPR11041.1 Gene: traA Feature: domain Description: TraA_Ti Location: 1059341-1059779 bp Feature: domain Description: TraA_Ti Location: 1 059341 -1 059779 bp Feature: gene Location: 1365912-1366373 bp Ori: SPR12490.1 Gene: traA Feature: domain Description: TraA_Ti Location: 1365933-1366371 bp Feature: domain Description: TraA_Ti Location: 1 365933-1 366371 bp Feature: gene Location: 1367046-1367366 bp Ori: SPR12495.1 Feature: domain Description: RVT_N Location: 1367103-1367349 bp Feature: domain Description: RVT_N Location: 1 3671 03-1 367349 bp Feature: gene Location: 1367388-1368269 bp Ori: SPR12498.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1367397-1368042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 367397-1 368042 bp Feature: domain Description: GIIM Note: maturase Location: 1368114-1368264 bp Feature: domain Description: GIIM Note: maturase Location: 1 3681 1 4-1 368264 bp Feature: gene Location: 1368270-1368416 bp Feature: gene Location: 1368522-1368761 bp Ori: SPR12505.1 Feature: domain Description: HNHc Note: nucleases Location: 1368537-1368702 bp Feature: domain Description: HNHc Note: nucleases Location: 1 368537-1 368702 bp Feature: gene Location: 1370781-1371083 bp Ori: SPR12517.1 Feature: domain Description: spoT_relA Location: 1370814-1371063 bp Feature: domain Description: spoT_relA Location: 1 37081 4-1 371 063 bp Feature: gene Location: 1371492-1371617 bp Feature: gene Location: 1371618-1371965 bp Ori: SPR12524.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1371621-1371963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 621 -1 371 963 bp Feature: gene Location: 1372462-1373802 bp Ori: SPR12528.1 Feature: domain Description: Arm-DNA-bind_3 Location: 1372489-1372753 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 372489-1 372753 bp Feature: domain Description: XerC Location: 1372810-1373680 bp Feature: domain Description: XerC Location: 1 37281 0-1 373680 bp Feature: gene Location: 1373867-1374190 bp Feature: gene Location: 1416919-1417227 bp Ori: SPR12701.1 Feature: domain Description: HTH_Tnp_4 Location: 1416979-1417129 bp Feature: domain Description: HTH_Tnp_4 Location: 1 41 6979-1 41 71 29 bp Feature: gene Location: 1417534-1417662 bp Feature: gene Location: 1417811-1418317 bp Ori: SPR12707.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417817-1418186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 781 7-1 41 81 86 bp Feature: gene Location: 1418509-1419351 bp Ori: SPR12709.1 Feature: domain Description: COG3547 Location: 1418521-1419334 bp Feature: domain Description: COG3547 Location: 1 41 8521 -1 41 9334 bp Feature: gene Location: 1419677-1419817 bp Ori: SPR12713.1 Feature: domain Description: RVT_N Location: 1419680-1419800 bp Feature: domain Description: RVT_N Location: 1 41 9680-1 41 9800 bp Feature: gene Location: 1526625-1527320 bp Ori: SPR13061.1 Feature: domain Description: KOG4767 Location: 1526628-1527297 bp Feature: domain Description: KOG4767 Location: 1 526628-1 527297 bp Feature: gene Location: 1527887-1528012 bp Feature: gene Location: 1528013-1528501 bp Ori: SPR13067.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1528028-1528499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 528028-1 528499 bp Feature: gene Location: 1529438-1529794 bp Ori: SPR13070.1 Feature: domain Description: HTH_Tnp_4 Location: 1529498-1529645 bp Feature: domain Description: HTH_Tnp_4 Location: 1 529498-1 529645 bp Feature: gene Location: 1529874-1529966 bp Feature: gene Location: 1589499-1589804 bp Ori: SPR13244.1 Feature: domain Description: HTH_Tnp_4 Location: 1589505-1589616 bp Feature: domain Description: HTH_Tnp_4 Location: 1 589505-1 58961 6 bp Feature: gene Location: 1589822-1590493 bp Ori: SPR13246.1 Feature: domain Description: DDE_Tnp_1_3 Location: 1589927-1590386 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 589927-1 590386 bp Feature: gene Location: 1590784-1591194 bp Ori: SPR13248.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1590790-1591159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 590790-1 591 1 59 bp Feature: gene Location: 1591386-1592228 bp Ori: SPR13250.1 Feature: domain Description: COG3547 Location: 1591398-1592211 bp Feature: domain Description: COG3547 Location: 1 591 398-1 59221 1 bp Feature: gene Location: 1592554-1592694 bp Ori: SPR13253.1 Feature: domain Description: RVT_N Location: 1592557-1592677 bp Feature: domain Description: RVT_N Location: 1 592557-1 592677 bp Feature: gene Location: 1635581-1636771 bp Ori: SPR13359.1 Feature: domain Description: DnaA_N Location: 1636526-1636718 bp Feature: domain Description: DnaA_N Location: 1 636526-1 63671 8 bp Feature: gene Location: 1636722-1637258 bp Feature: gene Location: 1637418-1638569 bp Ori: SPR13363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1637712-1638396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 63771 2-1 638396 bp Feature: gene Location: 1638946-1639497 bp Ori: SPR13365.1 Gene: traI Feature: domain Description: TraI_TIGR Location: 1638952-1639450 bp Feature: domain Description: TraI_TIGR Location: 1 638952-1 639450 bp Feature: gene Location: 1639549-1640472 bp Ori: SPR13366.1 Feature: domain Description: Transposase_31 Location: 1639567-1640143 bp Feature: domain Description: Transposase_31 Location: 1 639567-1 6401 43 bp Feature: domain Description: YadD Location: 1640209-1640461 bp Feature: domain Description: YadD Location: 1 640209-1 640461 bp Feature: gene Location: 1711803-1712054 bp Feature: gene Location: 1712035-1712157 bp Feature: gene Location: 1712237-1712419 bp Ori: SPR13523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1712330-1712414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 2330-1 71 241 4 bp Feature: gene Location: 1712728-1713507 bp Ori: SPR13525.1 Feature: domain Description: COG3415 Location: 1712731-1713067 bp Feature: domain Description: COG341 5 Location: 1 71 2731 -1 71 3067 bp Feature: domain Description: DDE_3 Location: 1713142-1713502 bp Feature: domain Description: DDE_3 Location: 1 71 31 42-1 71 3502 bp Feature: gene Location: 1713507-1713701 bp Ori: SPR13527.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1713519-1713639 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 71 351 9-1 71 3639 bp Feature: gene Location: 1760537-1760755 bp Feature: gene Location: 1761152-1761658 bp Ori: SPR13615.1 Feature: domain Description: DDE_3 Location: 1761206-1761623 bp Feature: domain Description: DDE_3 Location: 1 761 206-1 761 623 bp Feature: gene Location: 1761680-1762219 bp Ori: SPR13617.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1761689-1761869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 761 689-1 761 869 bp Feature: domain Description: GIIM Note: maturase Location: 1761944-1762166 bp Feature: domain Description: GIIM Note: maturase Location: 1 761 944-1 7621 66 bp Feature: gene Location: 1762221-1762826 bp Ori: SPR13619.1 Feature: domain Description: DDE_Tnp_1_3 Location: 1762260-1762719 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 762260-1 76271 9 bp Feature: gene Location: 1763433-1763594 bp Ori: SPR13621.1 Feature: domain Description: PRK09362 Location: 1763436-1763586 bp Feature: domain Description: PRK09362 Location: 1 763436-1 763586 bp Feature: gene Location: 1815101-1815214 bp Feature: gene Location: 1815229-1817199 bp Ori: SPR13699.1 Feature: domain Description: Autotransporter Location: 1816390-1817086 bp Feature: domain Description: Autotransporter Location: 1 81 6390-1 81 7086 bp Feature: gene Location: 1818872-1819348 bp Ori: SPR13700.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1818923-1819277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 8923-1 81 9277 bp Feature: gene Location: 1819460-1820080 bp Ori: SPR13701.1 Gene: clpP Feature: domain Description: clpP Location: 1819478-1820060 bp Feature: domain Description: clpP Location: 1 81 9478-1 820060 bp Feature: gene Location: 1820590-1820784 bp Ori: SPR13702.1 Feature: domain Description: HTH_Tnp_4 Location: 1820731-1820782 bp Feature: domain Description: HTH_Tnp_4 Location: 1 820731 -1 820782 bp Feature: gene Location: 2013765-2013884 bp Ori: SPR13932.1 Gene: dnaB Feature: domain Description: PRK09165 Location: 2013774-2013873 bp Feature: domain Description: PRK091 65 Location: 201 3774-201 3873 bp Feature: gene Location: 2013999-2014127 bp Feature: gene Location: 2014180-2014350 bp Ori: SPR13934.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2014195-2014348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 41 95-201 4348 bp Feature: gene Location: 2014522-2014731 bp Ori: SPR13935.1 Feature: domain Description: GIIM Note: maturase Location: 2014531-2014687 bp Feature: domain Description: GIIM Note: maturase Location: 201 4531 -201 4687 bp Feature: gene Location: 2014873-2015037 bp Feature: gene Location: 2061192-2061803 bp Feature: gene Location: 2062512-2062889 bp Ori: SPR13996.1 Feature: domain Description: HNHc Note: nucleases Location: 2062665-2062830 bp Feature: domain Description: HNHc Note: nucleases Location: 2062665-2062830 bp Feature: gene Location: 2063004-2063885 bp Ori: SPR13997.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063013-2063658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206301 3-2063658 bp Feature: domain Description: GIIM Note: maturase Location: 2063730-2063880 bp Feature: domain Description: GIIM Note: maturase Location: 2063730-2063880 bp Feature: gene Location: 2063907-2064227 bp Ori: SPR13998.1 Feature: domain Description: RVT_N Location: 2063964-2064210 bp Feature: domain Description: RVT_N Location: 2063964-206421 0 bp Feature: gene Location: 2065115-2065285 bp Feature: gene Location: 2065604-2065789 bp Feature: gene Location: 2066073-2066321 bp Feature: gene Location: 2066409-2066555 bp Ori: SPR14002.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2066412-2066544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206641 2-2066544 bp Feature: gene Location: 2066673-2066816 bp Ori: SPR14003.1 Feature: domain Description: HTH_Tnp_4 Location: 2066736-2066811 bp Feature: domain Description: HTH_Tnp_4 Location: 2066736-206681 1 bp Feature: gene Location: 2066875-2067012 bp Feature: gene Location: 2156849-2157724 bp Ori: SPR14085.1 Feature: domain Description: Arm-DNA-bind_3 Location: 2156951-2157152 bp Feature: domain Description: Arm-DNA-bind_3 Location: 21 56951 -21 571 52 bp Feature: domain Description: Phage_int_SAM_5 Location: 2157152-2157476 bp Feature: domain Description: Phage_int_SAM_5 Location: 21 571 52-21 57476 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2157512-2157713 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 21 5751 2-21 5771 3 bp Feature: gene Location: 2157891-2158232 bp Ori: SPR14086.1 Feature: domain Description: INT_P4_C Location: 2157897-2158122 bp Feature: domain Description: INT_P4_C Location: 21 57897-21 581 22 bp Feature: gene Location: 2158836-2159975 bp Ori: SPR14087.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2159121-2159805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 591 21 -21 59805 bp Feature: gene Location: 2160294-2160617 bp Feature: gene Location: 2160617-2161009 bp Ori: SPR14089.1 Feature: domain Description: TraE Location: 2160620-2160998 bp Feature: domain Description: TraE Location: 21 60620-21 60998 bp Feature: gene Location: 2204984-2205100 bp Feature: gene Location: 2205100-2205252 bp Ori: SPR14136.1 Feature: domain Description: HTH_Tnp_4 Location: 2205103-2205214 bp Feature: domain Description: HTH_Tnp_4 Location: 22051 03-220521 4 bp Feature: gene Location: 2206168-2207307 bp Ori: SPR14137.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2206453-2207137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2206453-22071 37 bp Feature: gene Location: 2207684-2208235 bp Ori: SPR14138.1 Gene: traI Feature: domain Description: TraI_TIGR Location: 2207690-2208188 bp Feature: domain Description: TraI_TIGR Location: 2207690-22081 88 bp Feature: gene Location: 2208220-2209302 bp Ori: SPR14139.1 Feature: domain Description: Transposase_31 Location: 2208238-2208436 bp Feature: domain Description: Transposase_31 Location: 2208238-2208436 bp Feature: domain Description: Transposase_31 Location: 2208565-2208997 bp Feature: domain Description: Transposase_31 Location: 2208565-2208997 bp Feature: domain Description: YadD Location: 2209102-2209267 bp Feature: domain Description: YadD Location: 22091 02-2209267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ETC_C1_NDUFA4 (pfam04800), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_1 (pfam01609), DDE_Tnp_4 (pfam13359), ANK (smart00248), UDG_fam4 (TIGR00758), DnaA_N (pfam11638)
PRK09165 (replicative DNA helicase; Provisional), rnc (PRK00102), COG3547 (Transposase ), HTH_Tnp_4 (pfam13613), rbfA (TIGR00082), infB (PRK05306), CorB (COG4536), DDE_Tnp_1_3 (pfam13612), COG3415 (Transposase ), AtpF (COG0711)
ATP-synt_Fo_b (cd06503), PgsA (COG0558), Autotransporter (smart00869), TraE (pfam05309), INT_P4_C (cd00801), Arm-DNA-bind_3 (pfam13356), Phage_int_SAM_5 (pfam13102), INT_Rci_Hp1_C (cd00796), Vut_1 (pfam02592), TraA_Ti (TIGR02768)
HTH_Tnp_IS630 (pfam01710), TraD (pfam06412), MobA_MobL (pfam03389), spoT_relA (TIGR00691), XerC (COG4973), KOG4767 (KOG4767, Cytochrome c oxidase, subunit II, and related proteins ), TraI_TIGR (TIGR02760), Transposase_31 (pfam04754), YadD (COG5464), DDE_3 (pfam13358)
PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), clpP