myRT

myRT report for GCA_900476435.1_SHEWBE_PRJEB25587v2

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Seq: LS483452.1 Shewanella benthica strain DB21MT-2 genome assembly, chromosome: SHEWBE (4353505 bp)
Overview 1 RT 1: 2092466-2100216 bp 2 RT 2: 2161650-2165750 bp 3 RT 3: 2852543-2854802 bp 4 RT 4: 3173783-3178306 bp Neighborhood of RT #1 [2092466, 2100216] PrtC DUF3656 PrtC RVT_N RVT-GII GIIM RAYT RAYT Neighborhood of RT #2 [2161650, 2165770] DDE_Tnp_1 RVT-UG12 DOPA_dioxygen Neighborhood of RT #3 [2852543, 2854802] RVT-Retrons HTH_XRE Neighborhood of RT #4 [3173783, 3178725] Na_symport_sm RVT_N RVT-GII GIIM Rhs_assc_core Feature: gene Location: 2092466-2094757 bp Ori: SQH76192.1 Feature: domain Description: PrtC Location: 2092478-2093393 bp Feature: domain Description: PrtC Location: 2092478-2093393 bp Feature: domain Description: DUF3656 Location: 2093492-2093843 bp Feature: domain Description: DUF3656 Location: 2093492-2093843 bp Feature: domain Description: PrtC Location: 2094095-2094581 bp Feature: domain Description: PrtC Location: 2094095-2094581 bp Feature: gene Location: 2095389-2095520 bp Feature: gene Location: 2095566-2097038 bp Ori: SQH76194.1 Feature: domain Description: RVT_N Location: 2095614-2095857 bp Feature: domain Description: RVT_N Location: 209561 4-2095857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2095902-2096529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2095902-2096529 bp Feature: domain Description: GIIM Note: maturase Location: 2096586-2096814 bp Feature: domain Description: GIIM Note: maturase Location: 2096586-209681 4 bp Feature: gene Location: 2097771-2098802 bp Ori: SQH76195.1 Feature: domain Description: RAYT Location: 2097822-2098023 bp Feature: domain Description: RAYT Location: 2097822-2098023 bp Feature: domain Description: RAYT Location: 2098176-2098374 bp Feature: domain Description: RAYT Location: 20981 76-2098374 bp Feature: gene Location: 2099158-2100216 bp Feature: gene Location: 2161650-2162096 bp Feature: gene Location: 2162191-2163459 bp Ori: SQH76265.1 Feature: domain Description: DDE_Tnp_1 Location: 2162539-2163217 bp Feature: domain Description: DDE_Tnp_1 Location: 21 62539-21 6321 7 bp Feature: gene Location: 2163649-2164728 bp Ori: SQH76266.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2163655-2163910 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 21 63655-21 6391 0 bp Feature: gene Location: 2164820-2164972 bp Feature: gene Location: 2165411-2165770 bp Ori: SQH76268.1 Feature: domain Description: DOPA_dioxygen Location: 2165453-2165750 bp Feature: domain Description: DOPA_dioxygen Location: 21 65453-21 65750 bp Feature: gene Location: 2852543-2852779 bp Feature: gene Location: 2853158-2853286 bp Feature: gene Location: 2853336-2854328 bp Ori: SQH76927.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2853522-2854056 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2853522-2854056 bp Feature: gene Location: 2854303-2854614 bp Ori: SQH76928.1 Feature: domain Description: HTH_XRE Location: 2854318-2854480 bp Feature: domain Description: HTH_XRE Location: 285431 8-2854480 bp Feature: gene Location: 2854659-2854802 bp Feature: gene Location: 3173783-3174049 bp Ori: SQH77264.1 Feature: domain Description: Na_symport_sm Location: 3173819-3174044 bp Feature: domain Description: Na_symport_sm Location: 31 7381 9-31 74044 bp Feature: gene Location: 3174089-3174352 bp Feature: gene Location: 3175005-3176477 bp Ori: SQH77266.1 Feature: domain Description: RVT_N Location: 3175053-3175296 bp Feature: domain Description: RVT_N Location: 31 75053-31 75296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3175341-3175968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 75341 -31 75968 bp Feature: domain Description: GIIM Note: maturase Location: 3176028-3176253 bp Feature: domain Description: GIIM Note: maturase Location: 31 76028-31 76253 bp Feature: gene Location: 3177336-3177632 bp Feature: gene Location: 3177640-3178725 bp Ori: SQH77268.1 Feature: domain Description: Rhs_assc_core Location: 3178081-3178306 bp Feature: domain Description: Rhs_assc_core Location: 31 78081 -31 78306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrtC (COG0826), DUF3656 (pfam12392), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RAYT (COG1943), DDE_Tnp_1 (pfam01609), RVT-UG12, DOPA_dioxygen (pfam08883), RVT-Retrons
HTH_XRE (smart00530), Na_symport_sm (TIGR03647), Rhs_assc_core (TIGR03696)