myRT

myRT report for GCA_900478155.1_47328_D01

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Seq: LS483474.1 Salmonella enterica subsp. diarizonae strain NCTC10381 genome assembly, chromosome: 1 (5219421 bp)
Overview 1 RT 1: 631204-636682 bp 2 RT 2: 4353814-4361396 bp Neighborhood of RT #1 [631204, 636682] FimC PRK15223 RVT-UG4 Neighborhood of RT #2 [4353814, 4361416] AAA_15 RVT-Retrons AIDA AIDA autotrans_barl COG3177 Feature: gene Location: 631204-631878 bp Ori: SQI58226.1 Gene: caf1M_1 Feature: domain Description: FimC Location: 631222-631864 bp Feature: domain Description: FimC Location: 631 222-631 864 bp Feature: gene Location: 632005-634515 bp Ori: SQI58229.1 Gene: caf1A_2 Feature: domain Description: PRK15223 Location: 632014-634513 bp Feature: domain Description: PRK1 5223 Location: 63201 4-63451 3 bp Feature: gene Location: 634533-635510 bp Ori: SQI58230.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 634890-635337 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 634890-635337 bp Feature: gene Location: 635556-636020 bp Feature: gene Location: 636293-636682 bp Feature: gene Location: 4353814-4355934 bp Ori: SQI66481.1 Feature: domain Description: AAA_15 Location: 4353817-4354798 bp Feature: domain Description: AAA_1 5 Location: 435381 7-4354798 bp Feature: gene Location: 4355931-4356110 bp Feature: gene Location: 4356107-4357210 bp Ori: SQI66483.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4356245-4356809 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4356245-4356809 bp Feature: gene Location: 4357489-4359801 bp Ori: SQI66484.1 Gene: yaiU Feature: domain Description: AIDA Location: 4357690-4357837 bp Feature: domain Description: AIDA Location: 4357690-4357837 bp Feature: domain Description: AIDA Location: 4358032-4358134 bp Feature: domain Description: AIDA Location: 4358032-43581 34 bp Feature: domain Description: autotrans_barl Location: 4358587-4359799 bp Feature: domain Description: autotrans_barl Location: 4358587-4359799 bp Feature: gene Location: 4360118-4361416 bp Ori: SQI66485.1 Feature: domain Description: COG3177 Location: 4360241-4361396 bp Feature: domain Description: COG31 77 Location: 4360241 -4361 396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), PRK15223 (fimbrial biogenesis outer membrane usher protein), RVT-UG4, AAA_15 (pfam13175), RVT-Retrons, AIDA (pfam16168), autotrans_barl (TIGR01414), COG3177 (Fic family protein )