myRT

myRT report for GCA_900497025.1_ASM90049702v1

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Seq: LS998783.1 Pseudomonas aeruginosa isolate 1 genome assembly, chromosome: 1 (7207057 bp)
Overview 1 RT 1: 719638-729971 bp 2 RT 2: 746229-754393 bp 3 RT 3: 1061529-1067235 bp 4 RT 4: 1227136-1233946 bp 5 RT 5: 2734742-2739800 bp Neighborhood of RT #1 [719638, 729973] HTH_XRE RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [746229, 754407] PRK10770 LptD RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [1061529, 1067264] Nnt1 YbaY RVT-GII GIIM HNHc TIGR00244 ribD Neighborhood of RT #4 [1227136, 1234143] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Neighborhood of RT #5 [2734742, 2739919] AAA_21 AAA_21 RVT-UG5 COG4584 IstB_IS21 Feature: gene Location: 719638-719868 bp Feature: gene Location: 719966-720205 bp Ori: SZD39250.1 Feature: domain Description: HTH_XRE Location: 719978-720122 bp Feature: domain Description: HTH_XRE Location: 71 9978-7201 22 bp Feature: gene Location: 721510-723195 bp Ori: SZD39251.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 721567-721807 bp Feature: domain Description: RVT_N Location: 721 567-721 807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721855-722491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 721 855-722491 bp Feature: domain Description: GIIM Note: maturase Location: 722545-722776 bp Feature: domain Description: GIIM Note: maturase Location: 722545-722776 bp Feature: domain Description: HNH Note: nucleases Location: 723028-723166 bp Feature: domain Description: HNH Note: nucleases Location: 723028-7231 66 bp Feature: gene Location: 724276-728013 bp Ori: SZD39252.1 Gene: gmr_2 Feature: domain Description: PBP2_BvgS_HisK_like Location: 724384-725041 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 724384-725041 bp Feature: domain Description: PRK09776 Location: 725254-725725 bp Feature: domain Description: PRK09776 Location: 725254-725725 bp Feature: domain Description: PAS Location: 725782-726307 bp Feature: domain Description: PAS Location: 725782-726307 bp Feature: domain Description: PRK10060 Location: 726319-727963 bp Feature: domain Description: PRK1 0060 Location: 72631 9-727963 bp Feature: gene Location: 728120-729973 bp Ori: SZD39253.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 728132-729971 bp Feature: domain Description: PRK05658 Location: 7281 32-729971 bp Feature: gene Location: 746229-747521 bp Ori: SZD39271.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 746319-747513 bp Feature: domain Description: PRK1 0770 Location: 74631 9-74751 3 bp Feature: gene Location: 747502-750273 bp Ori: SZD39272.1 Gene: lptD Feature: domain Description: LptD Location: 747697-750259 bp Feature: domain Description: LptD Location: 747697-750259 bp Feature: gene Location: 750406-751716 bp Ori: SZD39273.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750409-750985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750409-750985 bp Feature: domain Description: YkfC Location: 751195-751348 bp Feature: domain Description: YkfC Location: 751 1 95-751 348 bp Feature: domain Description: HNH Note: nucleases Location: 751522-751660 bp Feature: domain Description: HNH Note: nucleases Location: 751 522-751 660 bp Feature: gene Location: 752960-753094 bp Feature: gene Location: 753391-754407 bp Ori: SZD39275.1 Feature: domain Description: COG3178 Location: 753394-754393 bp Feature: domain Description: COG31 78 Location: 753394-754393 bp Feature: gene Location: 1061529-1062191 bp Ori: SZD39563.1 Gene: prmA_1 Feature: domain Description: Nnt1 Location: 1061535-1062000 bp Feature: domain Description: Nnt1 Location: 1 061 535-1 062000 bp Feature: gene Location: 1062188-1062646 bp Ori: SZD39564.1 Feature: domain Description: YbaY Location: 1062197-1062641 bp Feature: domain Description: YbaY Location: 1 0621 97-1 062641 bp Feature: gene Location: 1064281-1065585 bp Ori: SZD39565.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064284-1064860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 064284-1 064860 bp Feature: domain Description: GIIM Note: maturase Location: 1064911-1065145 bp Feature: domain Description: GIIM Note: maturase Location: 1 06491 1 -1 0651 45 bp Feature: domain Description: HNHc Note: nucleases Location: 1065364-1065529 bp Feature: domain Description: HNHc Note: nucleases Location: 1 065364-1 065529 bp Feature: gene Location: 1065682-1066146 bp Ori: SZD39566.1 Gene: nrdR Feature: domain Description: TIGR00244 Location: 1065685-1066123 bp Feature: domain Description: TIGR00244 Location: 1 065685-1 0661 23 bp Feature: gene Location: 1066143-1067264 bp Ori: SZD39567.1 Gene: ribD Feature: domain Description: ribD Location: 1066158-1067235 bp Feature: domain Description: ribD Location: 1 0661 58-1 067235 bp Feature: gene Location: 1227136-1227963 bp Ori: SZD39727.1 Gene: glnQ_2 Feature: domain Description: ABC_phnC Location: 1227166-1227880 bp Feature: domain Description: ABC_phnC Location: 1 2271 66-1 227880 bp Feature: gene Location: 1228306-1228947 bp Ori: SZD39728.1 Feature: domain Description: DUF772 Location: 1228456-1228651 bp Feature: domain Description: DUF772 Location: 1 228456-1 228651 bp Feature: gene Location: 1229336-1230604 bp Ori: SZD39729.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1229549-1230206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 229549-1 230206 bp Feature: domain Description: GIIM Note: maturase Location: 1230284-1230506 bp Feature: domain Description: GIIM Note: maturase Location: 1 230284-1 230506 bp Feature: gene Location: 1231336-1231515 bp Feature: gene Location: 1232599-1234143 bp Ori: SZD39731.1 Feature: domain Description: CHD Location: 1232815-1233229 bp Feature: domain Description: CHD Location: 1 23281 5-1 233229 bp Feature: domain Description: CHD Location: 1233457-1233946 bp Feature: domain Description: CHD Location: 1 233457-1 233946 bp Feature: gene Location: 2734742-2735881 bp Ori: SZD41175.1 Feature: domain Description: AAA_21 Location: 2734814-2734883 bp Feature: domain Description: AAA_21 Location: 273481 4-2734883 bp Feature: domain Description: AAA_21 Location: 2735357-2735687 bp Feature: domain Description: AAA_21 Location: 2735357-2735687 bp Feature: gene Location: 2735881-2736438 bp Feature: gene Location: 2736435-2737520 bp Ori: SZD41177.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2736930-2737401 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2736930-2737401 bp Feature: gene Location: 2737615-2739123 bp Ori: SZD41178.1 Feature: domain Description: COG4584 Location: 2737663-2738470 bp Feature: domain Description: COG4584 Location: 2737663-2738470 bp Feature: gene Location: 2739116-2739919 bp Ori: SZD41179.1 Feature: domain Description: IstB_IS21 Location: 2739272-2739800 bp Feature: domain Description: IstB_IS21 Location: 2739272-2739800 bp Sorry, your browser 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Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), Nnt1 (COG3897), YbaY (COG3126), HNHc (smart00507), TIGR00244 (transcriptional regulator NrdR), ribD (PRK10786), ABC_phnC (TIGR02315)
DUF772 (pfam05598), CHD (cd07302), AAA_21 (pfam13304), RVT-UG5, COG4584 (Transposase ), IstB_IS21 (pfam01695)