myRT

myRT report for GCA_900497095.1_ASM90049709v1

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Seq: LS998785.1 Escherichia coli isolate EC-TO75 genome assembly, chromosome: 1 (4750815 bp)
Overview 1 RT 1: 98312-102195 bp 2 RT 2: 4333848-4339095 bp Neighborhood of RT #1 [98312, 102200] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [4333848, 4339322] SLATT_5 RVT-UG17 7tmA_mAChR_GAR-2-like Peptidase_S74 Feature: gene Location: 98312-99028 bp Ori: SZD46403.1 Gene: rph Feature: domain Description: rph Location: 98315-99023 bp Feature: domain Description: rph Location: 9831 5-99023 bp Feature: gene Location: 99095-99736 bp Ori: SZD46404.1 Gene: pyrE Feature: domain Description: pyrE Location: 99098-99731 bp Feature: domain Description: pyrE Location: 99098-99731 bp Feature: gene Location: 100034-100993 bp Ori: SZD46405.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100169-100718 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 001 69-1 0071 8 bp Feature: gene Location: 101039-101635 bp Ori: SZD46406.1 Gene: slmA Feature: domain Description: slmA Location: 101045-101621 bp Feature: domain Description: slmA Location: 1 01 045-1 01 621 bp Feature: gene Location: 101742-102200 bp Ori: SZD46407.1 Gene: dut Feature: domain Description: dut Location: 101748-102195 bp Feature: domain Description: dut Location: 1 01 748-1 021 95 bp Feature: gene Location: 4333848-4334015 bp Feature: gene Location: 4334142-4334693 bp Ori: SZD50963.1 Feature: domain Description: SLATT_5 Location: 4334148-4334664 bp Feature: domain Description: SLATT_5 Location: 43341 48-4334664 bp Feature: gene Location: 4334671-4336041 bp Ori: SZD50964.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4334899-4335505 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4334899-4335505 bp Feature: gene Location: 4336149-4336283 bp Feature: gene Location: 4336479-4339322 bp Ori: SZD50967.1 Gene: pls Feature: domain Description: 7tmA_mAChR_GAR-2-like Location: 4336554-4337112 bp Feature: domain Description: 7tmA_mAChR_GAR-2-like Location: 4336554-43371 1 2 bp Feature: domain Description: Peptidase_S74 Location: 4338948-4339095 bp Feature: domain Description: Peptidase_S74 Location: 4338948-4339095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), SLATT_5 (pfam18160), RVT-UG17, 7tmA_mAChR_GAR-2-like (cd15302), Peptidase_S74 (pfam13884)

Seq: LS998786.1 Escherichia coli isolate EC-TO75 genome assembly, plasmid: 2 (103198 bp)
Overview 1 RT 1: 59-2905 bp 2 RT 2: 93150-97720 bp Neighborhood of RT #1 [59, 2910] KOG4768 RVT-GII PRK13732 DUF905 Neighborhood of RT #2 [93150, 97725] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 59-394 bp Ori: SZD70688.1 Gene: ltrA_1 Feature: domain Description: KOG4768 Location: 101-296 bp Feature: domain Description: KOG4768 Location: 101-2 96 bp Feature: gene Location: 523-1266 bp Ori: SZD70689.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526-1156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 6-1156 bp Feature: gene Location: 2157-2609 bp Ori: SZD70690.1 Gene: ssbF_1 Feature: domain Description: PRK13732 Location: 2160-2607 bp Feature: domain Description: PRK13732 Location: 2 160-2 607 bp Feature: gene Location: 2677-2910 bp Ori: SZD70691.1 Feature: domain Description: DUF905 Location: 2707-2905 bp Feature: domain Description: DUF905 Location: 2 707-2 905 bp Feature: gene Location: 93150-93362 bp Feature: gene Location: 93388-93582 bp Feature: gene Location: 94876-96777 bp Ori: SZD70797.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95143-95974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95143-95974 bp Feature: domain Description: Intron_maturas2 Location: 96088-96346 bp Feature: domain Description: Intron_maturas2 Location: 96088-96346 bp Feature: domain Description: HNHc Note: nucleases Location: 96520-96682 bp Feature: domain Description: HNHc Note: nucleases Location: 9652 0-96682 bp Feature: gene Location: 96972-97424 bp Ori: SZD70798.1 Gene: ssbF_2 Feature: domain Description: PRK13732 Location: 96975-97422 bp Feature: domain Description: PRK13732 Location: 96975-9742 2 bp Feature: gene Location: 97492-97725 bp Ori: SZD70799.1 Feature: domain Description: DUF905 Location: 97522-97720 bp Feature: domain Description: DUF905 Location: 9752 2 -9772 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), Intron_maturas2 (pfam01348), HNHc (smart00507)