myRT

myRT report for GCA_900520345.1_ASM90052034v1

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Seq: LS992182.1 Escherichia coli isolate Escherichia coli str. TO124 genome assembly, plasmid: 3 (133139 bp)
Overview 1 RT 1: 97797-102014 bp Neighborhood of RT #1 [97797, 102016] AdoMet_MTases RVT-GII Rve PRK13737 Feature: gene Location: 97797-98360 bp Ori: SYX53823.1 Feature: domain Description: AdoMet_MTases Location: 97959-98253 bp Feature: domain Description: AdoMet_MTases Location: 97959-98253 bp Feature: gene Location: 98360-98584 bp Feature: gene Location: 99876-100517 bp Ori: SYX53825.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100143-100359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 001 43-1 00359 bp Feature: gene Location: 100408-101112 bp Ori: SYX53826.1 Feature: domain Description: Rve Location: 100411-101056 bp Feature: domain Description: Rve Location: 1 0041 1 -1 01 056 bp Feature: gene Location: 101216-102016 bp Ori: SYX53827.1 Feature: domain Description: PRK13737 Location: 101219-102014 bp Feature: domain Description: PRK1 3737 Location: 1 01 21 9-1 0201 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT-GII, Rve (COG3316), PRK13737 (conjugal transfer pilus assembly protein TraU; Provisional)

Seq: LS992180.1 Escherichia coli isolate Escherichia coli str. TO124 genome assembly, chromosome: 1 (5137826 bp)
Overview 1 RT 1: 82643-86527 bp 2 RT 2: 2892134-2898468 bp Neighborhood of RT #1 [82643, 86592] InsE PHA02517 RVT-GII GIIM PHA02517 zinc_ribbon_11 Neighborhood of RT #2 [2892134, 2898476] RVT-Retrons PRK11388 Feature: gene Location: 82643-82969 bp Ori: SYX24042.1 Feature: domain Description: InsE Location: 82646-82967 bp Feature: domain Description: InsE Location: 82 646-82 967 bp Feature: gene Location: 82969-83448 bp Ori: SYX24043.1 Feature: domain Description: PHA02517 Location: 83029-83383 bp Feature: domain Description: PHA02 517 Location: 8302 9-83383 bp Feature: gene Location: 84040-85563 bp Ori: SYX24044.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84313-85045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84313-85045 bp Feature: domain Description: GIIM Note: maturase Location: 85120-85318 bp Feature: domain Description: GIIM Note: maturase Location: 8512 0-85318 bp Feature: gene Location: 85680-86126 bp Ori: SYX24045.1 Feature: domain Description: PHA02517 Location: 85683-86124 bp Feature: domain Description: PHA02 517 Location: 85683-8612 4 bp Feature: gene Location: 86092-86592 bp Ori: SYX24046.1 Feature: domain Description: zinc_ribbon_11 Location: 86209-86527 bp Feature: domain Description: zinc_ribbon_11 Location: 862 09-8652 7 bp Feature: gene Location: 2892134-2893261 bp Feature: gene Location: 2893319-2893486 bp Feature: gene Location: 2893508-2895265 bp Ori: SYX31431.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2893652-2894270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 893652 -2 8942 70 bp Feature: gene Location: 2895836-2896075 bp Feature: gene Location: 2896557-2898476 bp Ori: SYX31433.1 Gene: acoR Feature: domain Description: PRK11388 Location: 2896560-2898468 bp Feature: domain Description: PRK11388 Location: 2 896560-2 898468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), zinc_ribbon_11 (pfam11682), RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)

Seq: LS992181.1 Escherichia coli isolate Escherichia coli str. TO124 genome assembly, plasmid: 2 (149633 bp)
Overview 1 RT 1: 14285-18221 bp 2 RT 2: 29048-35174 bp 3 RT 3: 54645-58647 bp Neighborhood of RT #1 [14285, 18223] PRK09413 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [29048, 35179] PRK08181 rve RVT-GII GIIM Tra5 InsE Neighborhood of RT #3 [54645, 58700] InsE PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 14285-14650 bp Ori: SYX53558.1 Feature: domain Description: PRK09413 Location: 14288-14648 bp Feature: domain Description: PRK09413 Location: 14288-14648 bp Feature: gene Location: 14740-15186 bp Ori: SYX53559.1 Feature: domain Description: PHA02517 Location: 14743-15184 bp Feature: domain Description: PHA02517 Location: 14743 -15184 bp Feature: gene Location: 15303-16826 bp Ori: SYX53560.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15576-16308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15576-163 08 bp Feature: domain Description: GIIM Note: maturase Location: 16383-16581 bp Feature: domain Description: GIIM Note: maturase Location: 163 83 -16581 bp Feature: gene Location: 17418-17897 bp Ori: SYX53561.1 Feature: domain Description: PHA02517 Location: 17478-17832 bp Feature: domain Description: PHA02517 Location: 17478-1783 2 bp Feature: gene Location: 17897-18223 bp Ori: SYX53562.1 Feature: domain Description: InsE Location: 17900-18221 bp Feature: domain Description: InsE Location: 17900-18221 bp Feature: gene Location: 29048-29803 bp Ori: SYX53574.1 Feature: domain Description: PRK08181 Location: 29072-29783 bp Feature: domain Description: PRK08181 Location: 29072-29783 bp Feature: gene Location: 29800-31299 bp Ori: SYX53575.1 Feature: domain Description: rve Location: 30172-30565 bp Feature: domain Description: rve Location: 3 0172-3 0565 bp Feature: gene Location: 32393-33916 bp Ori: SYX53576.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32666-33398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2666-3 3 3 98 bp Feature: domain Description: GIIM Note: maturase Location: 33476-33671 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 476-3 3 671 bp Feature: gene Location: 34236-34883 bp Ori: SYX53577.1 Feature: domain Description: Tra5 Location: 34347-34857 bp Feature: domain Description: Tra5 Location: 3 43 47-3 4857 bp Feature: gene Location: 34880-35179 bp Ori: SYX53578.1 Feature: domain Description: InsE Location: 34907-35174 bp Feature: domain Description: InsE Location: 3 4907-3 5174 bp Feature: gene Location: 54645-54971 bp Ori: SYX53603.1 Feature: domain Description: InsE Location: 54648-54969 bp Feature: domain Description: InsE Location: 54648-54969 bp Feature: gene Location: 54971-55450 bp Ori: SYX53604.1 Feature: domain Description: PHA02517 Location: 55031-55385 bp Feature: domain Description: PHA02517 Location: 5503 1-553 85 bp Feature: gene Location: 56042-57565 bp Ori: SYX53605.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56315-57047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563 15-57047 bp Feature: domain Description: GIIM Note: maturase Location: 57122-57320 bp Feature: domain Description: GIIM Note: maturase Location: 57122-573 20 bp Feature: gene Location: 57682-58128 bp Ori: SYX53606.1 Feature: domain Description: PHA02517 Location: 57685-58126 bp Feature: domain Description: PHA02517 Location: 57685-58126 bp Feature: gene Location: 58131-58700 bp Ori: SYX53607.1 Gene: espC_2 Feature: domain Description: autotrans_barl Location: 58212-58647 bp Feature: domain Description: autotrans_barl Location: 58212-58647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), PRK08181 (transposase; Validated), rve (pfam00665), Tra5 (COG2801), autotrans_barl (TIGR01414)