myRT

myRT report for GCA_900520365.1_ASM90052036v1

Download annotations/find similar RTs

Seq: LS992192.1 Escherichia coli isolate Escherichia coli str. TO217 genome assembly, chromosome: 1 (5302459 bp)
Overview 1 RT 1: 2301543-2305514 bp 2 RT 2: 2958935-2965269 bp Neighborhood of RT #1 [2301543, 2305514] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Neighborhood of RT #2 [2958935, 2965277] RVT-Retrons PRK11388 Feature: gene Location: 2301543-2302445 bp Ori: SYX49998.1 Feature: domain Description: Macro_Appr_pase Location: 2301561-2302074 bp Feature: domain Description: Macro_Appr_pase Location: 2301 561 -2302074 bp Feature: gene Location: 2302454-2303038 bp Ori: SYX49999.1 Feature: domain Description: Caudo_TAP Location: 2302670-2303027 bp Feature: domain Description: Caudo_TAP Location: 2302670-2303027 bp Feature: gene Location: 2303151-2304521 bp Ori: SYX50000.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2303379-2303985 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 2303379-2303985 bp Feature: gene Location: 2304499-2305050 bp Ori: SYX50001.1 Feature: domain Description: SLATT_5 Location: 2304508-2305021 bp Feature: domain Description: SLATT_5 Location: 2304508-2305021 bp Feature: gene Location: 2305416-2305514 bp Feature: gene Location: 2958935-2960062 bp Feature: gene Location: 2960120-2960287 bp Feature: gene Location: 2960309-2962066 bp Ori: SYX50642.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2960453-2961071 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2960453-2961 071 bp Feature: gene Location: 2962637-2962876 bp Feature: gene Location: 2963358-2965277 bp Ori: SYX50644.1 Gene: acoR Feature: domain Description: PRK11388 Location: 2963361-2965269 bp Feature: domain Description: PRK1 1 388 Location: 2963361 -2965269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)

Seq: LS992194.1 Escherichia coli isolate Escherichia coli str. TO217 genome assembly, plasmid: 3 (86367 bp)
Overview 1 RT 1: 6240-11003 bp 2 RT 2: 77784-82547 bp Neighborhood of RT #1 [6240, 11107] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc AdoMet_MTases Neighborhood of RT #2 [77784, 82651] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc AdoMet_MTases Feature: gene Location: 6240-6473 bp Ori: SYX54457.1 Feature: domain Description: DUF905 Location: 6270-6468 bp Feature: domain Description: DUF905 Location: 62 70-6468 bp Feature: gene Location: 6531-6971 bp Ori: SYX54458.1 Gene: ssbF_2 Feature: domain Description: PRK13732 Location: 6534-6969 bp Feature: domain Description: PRK13732 Location: 6534-6969 bp Feature: gene Location: 7166-9067 bp Ori: SYX54459.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7433-8264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7433-82 64 bp Feature: domain Description: Intron_maturas2 Location: 8378-8636 bp Feature: domain Description: Intron_maturas2 Location: 8378-8636 bp Feature: domain Description: HNHc Note: nucleases Location: 8810-8972 bp Feature: domain Description: HNHc Note: nucleases Location: 8810-8972 bp Feature: gene Location: 10314-10544 bp Feature: gene Location: 10544-11107 bp Ori: SYX54461.1 Feature: domain Description: AdoMet_MTases Location: 10706-11003 bp Feature: domain Description: AdoMet_MTases Location: 10706-11003 bp Feature: gene Location: 77784-78017 bp Ori: SYX54546.1 Feature: domain Description: DUF905 Location: 77814-78012 bp Feature: domain Description: DUF905 Location: 77814-78012 bp Feature: gene Location: 78075-78515 bp Ori: SYX54547.1 Gene: ssbF_3 Feature: domain Description: PRK13732 Location: 78078-78513 bp Feature: domain Description: PRK13732 Location: 78078-78513 bp Feature: gene Location: 78710-80611 bp Ori: SYX54548.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78977-79808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78977-79808 bp Feature: domain Description: Intron_maturas2 Location: 79922-80180 bp Feature: domain Description: Intron_maturas2 Location: 7992 2 -80180 bp Feature: domain Description: HNHc Note: nucleases Location: 80354-80516 bp Feature: domain Description: HNHc Note: nucleases Location: 80354-80516 bp Feature: gene Location: 81858-82088 bp Feature: gene Location: 82088-82651 bp Ori: SYX54550.1 Feature: domain Description: AdoMet_MTases Location: 82250-82547 bp Feature: domain Description: AdoMet_MTases Location: 82 2 50-82 547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AdoMet_MTases (cl17173)

Seq: LS992193.1 Escherichia coli isolate Escherichia coli str. TO217 genome assembly, plasmid: 2 (128948 bp)
Overview 1 RT 1: 79997-84596 bp Neighborhood of RT #1 [79997, 84596] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 79997-80230 bp Ori: SYX54389.1 Feature: domain Description: DUF905 Location: 80027-80225 bp Feature: domain Description: DUF905 Location: 80027-80225 bp Feature: gene Location: 80298-80750 bp Ori: SYX54390.1 Gene: ssbF_1 Feature: domain Description: PRK13732 Location: 80301-80748 bp Feature: domain Description: PRK13 73 2 Location: 803 01-80748 bp Feature: gene Location: 80945-82846 bp Ori: SYX54391.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81212-82043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81212-82043 bp Feature: domain Description: Intron_maturas2 Location: 82157-82415 bp Feature: domain Description: Intron_maturas2 Location: 82157-82415 bp Feature: domain Description: HNHc Note: nucleases Location: 82589-82751 bp Feature: domain Description: HNHc Note: nucleases Location: 82589-82751 bp Feature: gene Location: 84140-84358 bp Feature: gene Location: 84384-84596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)