myRT

myRT report for GCA_900520375.1_ASM90052037v1

Download annotations/find similar RTs

Seq: LS992183.1 Citrobacter freundii isolate Citrobacter freundii str. U2785 genome assembly, chromosome: 1 (5009078 bp)
Overview 1 RT 1: 3797916-3815532 bp 2 RT 2: 4481509-4486917 bp Neighborhood of RT #1 [3797916, 3816188] scrB_fam fruct_sucro_rep RVT-GII GIIM RVT-GII DDE_Tnp_IS1 pfam14252 Big_9 Big_9 Big_9 tand_rpt_95 Big_9 tand_rpt_95 Big_9 Cadherin_4 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Big_9 Neighborhood of RT #2 [4481509, 4487174] SLATT_5 RVT-UG3 RVT-UG8 arc_metj Transposase_20 Feature: gene Location: 3797916-3799316 bp Ori: SYX29764.1 Gene: scrB Feature: domain Description: scrB_fam Location: 3797961-3799233 bp Feature: domain Description: scrB_fam Location: 3797961 -3799233 bp Feature: gene Location: 3799346-3800350 bp Ori: SYX29765.1 Gene: cra_3 Feature: domain Description: fruct_sucro_rep Location: 3799367-3800345 bp Feature: domain Description: fruct_sucro_rep Location: 3799367-3800345 bp Feature: gene Location: 3800784-3801389 bp Ori: SYX29766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3800799-3800871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3800799-3800871 bp Feature: domain Description: GIIM Note: maturase Location: 3800946-3801165 bp Feature: domain Description: GIIM Note: maturase Location: 3800946-3801 1 65 bp Feature: gene Location: 3801349-3801963 bp Ori: SYX29767.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3801358-3801916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3801 358-3801 91 6 bp Feature: gene Location: 3802013-3802306 bp Ori: SYX29768.1 Feature: domain Description: DDE_Tnp_IS1 Location: 3802016-3802301 bp Feature: domain Description: DDE_Tnp_IS1 Location: 380201 6-3802301 bp Feature: gene Location: 3802809-3816188 bp Ori: SYX29769.1 Feature: domain Description: pfam14252 Location: 3803040-3803484 bp Feature: domain Description: pfam1 4252 Location: 3803040-3803484 bp Feature: domain Description: Big_9 Location: 3803856-3804201 bp Feature: domain Description: Big_9 Location: 3803856-3804201 bp Feature: domain Description: Big_9 Location: 3804228-3804558 bp Feature: domain Description: Big_9 Location: 3804228-3804558 bp Feature: domain Description: Big_9 Location: 3804588-3804924 bp Feature: domain Description: Big_9 Location: 3804588-3804924 bp Feature: domain Description: tand_rpt_95 Location: 3805347-3805539 bp Feature: domain Description: tand_rpt_95 Location: 3805347-3805539 bp Feature: domain Description: Big_9 Location: 3805944-3806367 bp Feature: domain Description: Big_9 Location: 3805944-3806367 bp Feature: domain Description: tand_rpt_95 Location: 3807324-3807480 bp Feature: domain Description: tand_rpt_95 Location: 3807324-3807480 bp Feature: domain Description: Big_9 Location: 3808512-3808899 bp Feature: domain Description: Big_9 Location: 380851 2-3808899 bp Feature: domain Description: Cadherin_4 Location: 3809043-3809205 bp Feature: domain Description: Cadherin_4 Location: 3809043-3809205 bp Feature: domain Description: Big_9 Location: 3809529-3809769 bp Feature: domain Description: Big_9 Location: 3809529-3809769 bp Feature: domain Description: Big_9 Location: 3809781-3810105 bp Feature: domain Description: Big_9 Location: 3809781 -381 01 05 bp Feature: domain Description: Big_9 Location: 3810123-3810369 bp Feature: domain Description: Big_9 Location: 381 01 23-381 0369 bp Feature: domain Description: Big_9 Location: 3810378-3810693 bp Feature: domain Description: Big_9 Location: 381 0378-381 0693 bp Feature: domain Description: Big_9 Location: 3810717-3810957 bp Feature: domain Description: Big_9 Location: 381 071 7-381 0957 bp Feature: domain Description: Big_9 Location: 3810966-3811287 bp Feature: domain Description: Big_9 Location: 381 0966-381 1 287 bp Feature: domain Description: Big_9 Location: 3811305-3811548 bp Feature: domain Description: Big_9 Location: 381 1 305-381 1 548 bp Feature: domain Description: Big_9 Location: 3811566-3811872 bp Feature: domain Description: Big_9 Location: 381 1 566-381 1 872 bp Feature: domain Description: Big_9 Location: 3811887-3812133 bp Feature: domain Description: Big_9 Location: 381 1 887-381 21 33 bp Feature: domain Description: Big_9 Location: 3812145-3812466 bp Feature: domain Description: Big_9 Location: 381 21 45-381 2466 bp Feature: domain Description: Big_9 Location: 3812484-3812724 bp Feature: domain Description: Big_9 Location: 381 2484-381 2724 bp Feature: domain Description: Big_9 Location: 3812736-3813054 bp Feature: domain Description: Big_9 Location: 381 2736-381 3054 bp Feature: domain Description: Big_9 Location: 3813072-3813312 bp Feature: domain Description: Big_9 Location: 381 3072-381 331 2 bp Feature: domain Description: Big_9 Location: 3813333-3813633 bp Feature: domain Description: Big_9 Location: 381 3333-381 3633 bp Feature: domain Description: Big_9 Location: 3813651-3813894 bp Feature: domain Description: Big_9 Location: 381 3651 -381 3894 bp Feature: domain Description: Big_9 Location: 3813906-3814212 bp Feature: domain Description: Big_9 Location: 381 3906-381 421 2 bp Feature: domain Description: Big_9 Location: 3814236-3814473 bp Feature: domain Description: Big_9 Location: 381 4236-381 4473 bp Feature: domain Description: Big_9 Location: 3814488-3814791 bp Feature: domain Description: Big_9 Location: 381 4488-381 4791 bp Feature: domain Description: Big_9 Location: 3815193-3815532 bp Feature: domain Description: Big_9 Location: 381 51 93-381 5532 bp Feature: gene Location: 4481509-4481622 bp Feature: gene Location: 4482047-4482673 bp Ori: SYX30385.1 Feature: domain Description: SLATT_5 Location: 4482050-4482626 bp Feature: domain Description: SLATT_5 Location: 4482050-4482626 bp Feature: gene Location: 4482697-4483356 bp Ori: SYX30386.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4482985-4483336 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4482985-4483336 bp Feature: gene Location: 4483933-4485888 bp Ori: SYX30387.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4484431-4484875 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4484431 -4484875 bp Feature: gene Location: 4486022-4486213 bp Ori: SYX30388.1 Feature: domain Description: arc_metj Location: 4486085-4486193 bp Feature: domain Description: arc_metj Location: 4486085-44861 93 bp Feature: gene Location: 4486266-4487174 bp Ori: SYX30389.1 Feature: domain Description: Transposase_20 Location: 4486671-4486917 bp Feature: domain Description: Transposase_20 Location: 4486671 -448691 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT scrB_fam (TIGR01322), fruct_sucro_rep (TIGR02417), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS1 (pfam03400), pfam14252 (DUF4347;Domain of unknown function (DUF4347)), Big_9 (pfam17963), tand_rpt_95 (NF012211), Cadherin_4 (pfam17803), SLATT_5 (pfam18160)
RVT-UG3, RVT-UG8, arc_metj (LOAD_arc_metj), Transposase_20 (pfam02371)