myRT

myRT report for GCA_900520385.1_ASM90052038v1

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Seq: LS992188.1 Escherichia coli isolate Escherichia coli str. 3426 genome assembly, plasmid: 4 (96986 bp)
Overview 1 RT 1: 41986-47498 bp Neighborhood of RT #1 [41986, 47620] DUF3560 RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 41986-43347 bp Ori: SYX53180.1 Feature: domain Description: DUF3560 Location: 42253-42610 bp Feature: domain Description: DUF3560 Location: 42253-4261 0 bp Feature: gene Location: 43399-43629 bp Feature: gene Location: 45422-46696 bp Ori: SYX53182.1 Gene: ltrA_14 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45425-46007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45425-46007 bp Feature: domain Description: GIIM Note: maturase Location: 46058-46292 bp Feature: domain Description: GIIM Note: maturase Location: 46058-46292 bp Feature: domain Description: HNHc Note: nucleases Location: 46502-46661 bp Feature: domain Description: HNHc Note: nucleases Location: 46502-46661 bp Feature: gene Location: 47010-47201 bp Feature: gene Location: 47198-47620 bp Ori: SYX53184.1 Feature: domain Description: DUF1380 Location: 47201-47498 bp Feature: domain Description: DUF1 380 Location: 47201 -47498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: LS992185.1 Escherichia coli isolate Escherichia coli str. 3426 genome assembly, chromosome: 1 (4922897 bp)
Overview 1 RT 1: 627582-635448 bp 2 RT 2: 647378-652529 bp 3 RT 3: 1108233-1112667 bp 4 RT 4: 1949317-1954513 bp 5 RT 5: 2132197-2136248 bp 6 RT 6: 2559420-2563230 bp 7 RT 7: 2999490-3003703 bp Neighborhood of RT #1 [627582, 635462] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [647378, 652531] InsE PHA02517 RVT-GII GIIM fecE Neighborhood of RT #3 [1108233, 1112669] QdoI PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [1949317, 1954545] PHA02517 RVT-GII GIIM PHA02517 MFS_SLC46_TetA_like Neighborhood of RT #5 [2132197, 2136451] InsE PHA02517 RVT-GII GIIM PHA02517 Methyltransf_12 Neighborhood of RT #6 [2559420, 2563232] FimA PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #7 [2999490, 3003703] PRK10002 PHA02517 RVT-GII GIIM InsG Feature: gene Location: 627582-627854 bp Ori: SYX33395.1 Feature: domain Description: PRK09678 Location: 627591-627747 bp Feature: domain Description: PRK09678 Location: 62 7591-62 7747 bp Feature: gene Location: 628482-629468 bp Feature: gene Location: 629470-630402 bp Ori: SYX33397.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 629572-630166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62 9572 -630166 bp Feature: gene Location: 630857-631159 bp Ori: SYX33398.1 Gene: intS_1 Feature: domain Description: Arm-DNA-bind_3 Location: 630866-631118 bp Feature: domain Description: Arm-DNA-bind_3 Location: 630866-631118 bp Feature: gene Location: 632001-632372 bp Ori: SYX33399.1 Feature: domain Description: PHA02517 Location: 632004-632370 bp Feature: domain Description: PHA02 517 Location: 632 004-632 370 bp Feature: gene Location: 632564-634087 bp Ori: SYX33400.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632837-633569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632 837-633569 bp Feature: domain Description: GIIM Note: maturase Location: 633644-633842 bp Feature: domain Description: GIIM Note: maturase Location: 633644-633842 bp Feature: gene Location: 634679-634918 bp Ori: SYX33401.1 Feature: domain Description: PHA02517 Location: 634682-634853 bp Feature: domain Description: PHA02 517 Location: 634682 -634853 bp Feature: gene Location: 635160-635462 bp Ori: SYX33402.1 Feature: domain Description: InsE Location: 635199-635448 bp Feature: domain Description: InsE Location: 635199-635448 bp Feature: gene Location: 647378-647704 bp Ori: SYX33417.1 Feature: domain Description: InsE Location: 647381-647702 bp Feature: domain Description: InsE Location: 647381-647702 bp Feature: gene Location: 647704-648183 bp Ori: SYX33418.1 Feature: domain Description: PHA02517 Location: 647764-648118 bp Feature: domain Description: PHA02 517 Location: 647764-648118 bp Feature: gene Location: 648775-650298 bp Ori: SYX33419.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649048-649780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649048-649780 bp Feature: domain Description: GIIM Note: maturase Location: 649855-650053 bp Feature: domain Description: GIIM Note: maturase Location: 649855-650053 bp Feature: gene Location: 650949-651206 bp Feature: gene Location: 651764-652531 bp Ori: SYX33421.1 Gene: yusV_1 Feature: domain Description: fecE Location: 651767-652529 bp Feature: domain Description: fecE Location: 651767-652 52 9 bp Feature: gene Location: 1108233-1108583 bp Ori: SYX33850.1 Feature: domain Description: QdoI Location: 1108299-1108551 bp Feature: domain Description: QdoI Location: 11082 99-1108551 bp Feature: gene Location: 1109186-1109557 bp Ori: SYX33851.1 Feature: domain Description: PHA02517 Location: 1109189-1109555 bp Feature: domain Description: PHA02 517 Location: 1109189-1109555 bp Feature: gene Location: 1109749-1111272 bp Ori: SYX33852.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1110022-1110754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111002 2 -1110754 bp Feature: domain Description: GIIM Note: maturase Location: 1110829-1111027 bp Feature: domain Description: GIIM Note: maturase Location: 111082 9-111102 7 bp Feature: gene Location: 1111864-1112343 bp Ori: SYX33853.1 Feature: domain Description: PHA02517 Location: 1111924-1112278 bp Feature: domain Description: PHA02 517 Location: 111192 4-1112 2 78 bp Feature: gene Location: 1112343-1112669 bp Ori: SYX33854.1 Feature: domain Description: InsE Location: 1112346-1112667 bp Feature: domain Description: InsE Location: 1112 346-1112 667 bp Feature: gene Location: 1949317-1949817 bp Feature: gene Location: 1949699-1950070 bp Ori: SYX35051.1 Feature: domain Description: PHA02517 Location: 1949702-1950068 bp Feature: domain Description: PHA02 517 Location: 1949702 -1950068 bp Feature: gene Location: 1950262-1951785 bp Ori: SYX35053.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1950535-1951267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1950535-19512 67 bp Feature: domain Description: GIIM Note: maturase Location: 1951342-1951540 bp Feature: domain Description: GIIM Note: maturase Location: 1951342 -1951540 bp Feature: gene Location: 1952377-1952856 bp Ori: SYX35055.1 Feature: domain Description: PHA02517 Location: 1952437-1952791 bp Feature: domain Description: PHA02 517 Location: 1952 437-1952 791 bp Feature: gene Location: 1953352-1954545 bp Ori: SYX35057.1 Feature: domain Description: MFS_SLC46_TetA_like Location: 1953433-1954513 bp Feature: domain Description: MFS_SLC46_TetA_like Location: 1953433-1954513 bp Feature: gene Location: 2132197-2132523 bp Ori: SYX35397.1 Feature: domain Description: InsE Location: 2132200-2132521 bp Feature: domain Description: InsE Location: 2 132 2 00-2 132 52 1 bp Feature: gene Location: 2132523-2133002 bp Ori: SYX35399.1 Feature: domain Description: PHA02517 Location: 2132583-2132937 bp Feature: domain Description: PHA02 517 Location: 2 132 583-2 132 937 bp Feature: gene Location: 2133594-2135117 bp Ori: SYX35401.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2133867-2134599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 133867-2 134599 bp Feature: domain Description: GIIM Note: maturase Location: 2134674-2134872 bp Feature: domain Description: GIIM Note: maturase Location: 2 134674-2 134872 bp Feature: gene Location: 2135309-2135680 bp Ori: SYX35403.1 Feature: domain Description: PHA02517 Location: 2135312-2135678 bp Feature: domain Description: PHA02 517 Location: 2 135312 -2 135678 bp Feature: gene Location: 2135795-2136451 bp Ori: SYX35405.1 Feature: domain Description: Methyltransf_12 Location: 2135957-2136248 bp Feature: domain Description: Methyltransf_12 Location: 2 135957-2 1362 48 bp Feature: gene Location: 2559420-2559587 bp Ori: SYX35892.1 Feature: domain Description: FimA Location: 2559429-2559585 bp Feature: domain Description: FimA Location: 2 55942 9-2 559585 bp Feature: gene Location: 2559749-2560120 bp Ori: SYX35893.1 Feature: domain Description: PHA02517 Location: 2559752-2560118 bp Feature: domain Description: PHA02 517 Location: 2 559752 -2 560118 bp Feature: gene Location: 2560312-2561835 bp Ori: SYX35894.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2560585-2561317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 560585-2 561317 bp Feature: domain Description: GIIM Note: maturase Location: 2561392-2561590 bp Feature: domain Description: GIIM Note: maturase Location: 2 561392 -2 561590 bp Feature: gene Location: 2562427-2562906 bp Ori: SYX35895.1 Feature: domain Description: PHA02517 Location: 2562487-2562841 bp Feature: domain Description: PHA02 517 Location: 2 562 487-2 562 841 bp Feature: gene Location: 2562906-2563232 bp Ori: SYX35896.1 Feature: domain Description: InsE Location: 2562909-2563230 bp Feature: domain Description: InsE Location: 2 562 909-2 5632 30 bp Feature: gene Location: 2999490-3000470 bp Ori: SYX36334.1 Gene: ompD_2 Feature: domain Description: PRK10002 Location: 2999493-3000417 bp Feature: domain Description: PRK10002 Location: 2 999493-3000417 bp Feature: gene Location: 3000420-3000794 bp Ori: SYX36335.1 Feature: domain Description: PHA02517 Location: 3000423-3000783 bp Feature: domain Description: PHA02 517 Location: 300042 3-3000783 bp Feature: gene Location: 3000989-3002335 bp Ori: SYX36336.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3001085-3001817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3001085-3001817 bp Feature: domain Description: GIIM Note: maturase Location: 3001892-3002090 bp Feature: domain Description: GIIM Note: maturase Location: 3001892 -3002 090 bp Feature: gene Location: 3002428-3003342 bp Ori: SYX36337.1 Feature: domain Description: InsG Location: 3002431-3003304 bp Feature: domain Description: InsG Location: 3002 431-3003304 bp Feature: gene Location: 3003563-3003703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), fecE (PRK11231), QdoI (COG1917), MFS_SLC46_TetA_like (cd17330)
Methyltransf_12 (pfam08242), FimA (pfam16970), PRK10002 (porin OmpF), InsG (COG3385)

Seq: LS992186.1 Escherichia coli isolate Escherichia coli str. 3426 genome assembly, plasmid: 2 (164477 bp)
Overview 1 RT 1: 8599-19878 bp 2 RT 2: 88254-94249 bp 3 RT 3: 100533-105342 bp 4 RT 4: 160509-164337 bp Neighborhood of RT #1 [8599, 20000] PRK09409 RVT-GII GIIM HNHc AdoMet_MTases DUF3560 RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [88254, 94284] MalY PHA02517 RVT-GII GIIM InsE PHA02517 Neighborhood of RT #3 [100533, 105383] InsE PHA02517 RVT-GII GIIM Rve COG3547 Neighborhood of RT #4 [160509, 164381] PRK09409 RVT-GII Feature: gene Location: 8599-9504 bp Ori: SYX52847.1 Feature: domain Description: PRK09409 Location: 8602-9502 bp Feature: domain Description: PRK09409 Location: 8602-9502 bp Feature: gene Location: 10583-11146 bp Feature: gene Location: 12113-13387 bp Ori: SYX52849.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12116-12698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12116-12698 bp Feature: domain Description: GIIM Note: maturase Location: 12749-12983 bp Feature: domain Description: GIIM Note: maturase Location: 12749-12983 bp Feature: domain Description: HNHc Note: nucleases Location: 13193-13352 bp Feature: domain Description: HNHc Note: nucleases Location: 13 193 -13 3 52 bp Feature: gene Location: 13502-13732 bp Feature: gene Location: 13758-14321 bp Ori: SYX52851.1 Feature: domain Description: AdoMet_MTases Location: 13920-14220 bp Feature: domain Description: AdoMet_MTases Location: 13 920-14220 bp Feature: gene Location: 14369-15730 bp Ori: SYX52852.1 Feature: domain Description: DUF3560 Location: 14636-14993 bp Feature: domain Description: DUF3 560 Location: 1463 6-14993 bp Feature: gene Location: 15782-16012 bp Feature: gene Location: 17802-19076 bp Ori: SYX52854.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17805-18387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17805-183 87 bp Feature: domain Description: GIIM Note: maturase Location: 18438-18672 bp Feature: domain Description: GIIM Note: maturase Location: 1843 8-18672 bp Feature: domain Description: HNHc Note: nucleases Location: 18882-19041 bp Feature: domain Description: HNHc Note: nucleases Location: 18882-19041 bp Feature: gene Location: 19390-19581 bp Feature: gene Location: 19578-20000 bp Ori: SYX52856.1 Feature: domain Description: DUF1380 Location: 19581-19878 bp Feature: domain Description: DUF13 80 Location: 19581-19878 bp Feature: gene Location: 88254-89432 bp Ori: SYX52935.1 Gene: patB_3 Feature: domain Description: MalY Location: 88266-89400 bp Feature: domain Description: MalY Location: 88266-89400 bp Feature: gene Location: 90232-90711 bp Ori: SYX52936.1 Feature: domain Description: PHA02517 Location: 90292-90646 bp Feature: domain Description: PHA02517 Location: 90292-90646 bp Feature: gene Location: 91303-92826 bp Ori: SYX52937.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91576-92308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91576-923 08 bp Feature: domain Description: GIIM Note: maturase Location: 92383-92581 bp Feature: domain Description: GIIM Note: maturase Location: 923 83 -92581 bp Feature: gene Location: 93107-93418 bp Ori: SYX52938.1 Feature: domain Description: InsE Location: 93110-93401 bp Feature: domain Description: InsE Location: 93 110-93 401 bp Feature: gene Location: 93517-94284 bp Ori: SYX52939.1 Feature: domain Description: PHA02517 Location: 93541-94249 bp Feature: domain Description: PHA02517 Location: 93 541-94249 bp Feature: gene Location: 100533-100889 bp Ori: SYX52945.1 Feature: domain Description: InsE Location: 100536-100869 bp Feature: domain Description: InsE Location: 10053 6-100869 bp Feature: gene Location: 100938-101384 bp Ori: SYX52946.1 Feature: domain Description: PHA02517 Location: 100941-101382 bp Feature: domain Description: PHA02517 Location: 100941-1013 82 bp Feature: gene Location: 101502-103025 bp Ori: SYX52947.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101775-102507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101775-102507 bp Feature: domain Description: GIIM Note: maturase Location: 102582-102780 bp Feature: domain Description: GIIM Note: maturase Location: 102582-102780 bp Feature: gene Location: 103917-104621 bp Ori: SYX52948.1 Feature: domain Description: Rve Location: 103920-104565 bp Feature: domain Description: Rve Location: 103 920-104565 bp Feature: gene Location: 104850-105383 bp Ori: SYX52949.1 Feature: domain Description: COG3547 Location: 104886-105342 bp Feature: domain Description: COG3 547 Location: 104886-1053 42 bp Feature: gene Location: 160509-161414 bp Ori: SYX53014.1 Feature: domain Description: PRK09409 Location: 160512-161412 bp Feature: domain Description: PRK09409 Location: 160512-161412 bp Feature: gene Location: 162492-163055 bp Feature: gene Location: 164019-164381 bp Ori: SYX53016.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164022-164337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164022-1643 3 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173), DUF3560 (pfam12083), DUF1380 (pfam07128), MalY (COG1168), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)
Rve (COG3316), COG3547 (Transposase )

Seq: LS992187.1 Escherichia coli isolate Escherichia coli str. 3426 genome assembly, plasmid: 3 (99072 bp)
Overview 1 RT 1: 62786-67321 bp Neighborhood of RT #1 [62786, 67326] DUF1380 RVT-GII GIIM HNHc PRK13732 DUF905 Feature: gene Location: 62786-63208 bp Ori: SYX53086.1 Feature: domain Description: DUF1380 Location: 62789-63083 bp Feature: domain Description: DUF1380 Location: 62789-63083 bp Feature: gene Location: 63205-63396 bp Feature: gene Location: 63674-64948 bp Ori: SYX53088.1 Gene: ltrA_13 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63677-64259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63677-64 259 bp Feature: domain Description: GIIM Note: maturase Location: 64310-64544 bp Feature: domain Description: GIIM Note: maturase Location: 64 310-64 54 4 bp Feature: domain Description: HNHc Note: nucleases Location: 64754-64913 bp Feature: domain Description: HNHc Note: nucleases Location: 64 754 -64 913 bp Feature: gene Location: 66508-67035 bp Ori: SYX53089.1 Gene: ssbF_1 Feature: domain Description: PRK13732 Location: 66511-67033 bp Feature: domain Description: PRK13732 Location: 66511-67033 bp Feature: gene Location: 67093-67326 bp Ori: SYX53090.1 Feature: domain Description: DUF905 Location: 67123-67321 bp Feature: domain Description: DUF905 Location: 67123-67321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)