myRT

myRT report for GCA_900520395.1_ASM90052039v1

Download annotations/find similar RTs

Seq: LS992190.1 Escherichia coli isolate Escherichia coli str. TO148 genome assembly, chromosome: 1 (5124666 bp)
Overview 1 RT 1: 87748-91632 bp 2 RT 2: 2908462-2914796 bp Neighborhood of RT #1 [87748, 91697] InsE PHA02517 RVT-GII GIIM PHA02517 zinc_ribbon_11 Neighborhood of RT #2 [2908462, 2914804] RVT-Retrons PRK11388 Feature: gene Location: 87748-88074 bp Ori: SYX38206.1 Feature: domain Description: InsE Location: 87751-88072 bp Feature: domain Description: InsE Location: 87751 -88072 bp Feature: gene Location: 88074-88553 bp Ori: SYX38207.1 Feature: domain Description: PHA02517 Location: 88134-88488 bp Feature: domain Description: PHA0251 7 Location: 881 34-88488 bp Feature: gene Location: 89145-90668 bp Ori: SYX38208.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89418-90150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8941 8-901 50 bp Feature: domain Description: GIIM Note: maturase Location: 90225-90423 bp Feature: domain Description: GIIM Note: maturase Location: 90225-90423 bp Feature: gene Location: 90785-91231 bp Ori: SYX38209.1 Feature: domain Description: PHA02517 Location: 90788-91229 bp Feature: domain Description: PHA0251 7 Location: 90788-91 229 bp Feature: gene Location: 91197-91697 bp Ori: SYX38210.1 Feature: domain Description: zinc_ribbon_11 Location: 91314-91632 bp Feature: domain Description: zinc_ribbon_1 1 Location: 91 31 4-91 632 bp Feature: gene Location: 2908462-2909589 bp Feature: gene Location: 2909647-2909814 bp Feature: gene Location: 2909836-2911593 bp Ori: SYX40851.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2909980-2910598 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2909980-291 0598 bp Feature: gene Location: 2912164-2912403 bp Feature: gene Location: 2912885-2914804 bp Ori: SYX40853.1 Gene: acoR Feature: domain Description: PRK11388 Location: 2912888-2914796 bp Feature: domain Description: PRK1 1 388 Location: 291 2888-291 4796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), zinc_ribbon_11 (pfam11682), RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)

Seq: LS992191.1 Escherichia coli isolate Escherichia coli str. TO148 genome assembly, plasmid: 2 (133139 bp)
Overview 1 RT 1: 97797-102014 bp Neighborhood of RT #1 [97797, 102016] AdoMet_MTases RVT-GII Rve PRK13737 Feature: gene Location: 97797-98360 bp Ori: SYX53971.1 Feature: domain Description: AdoMet_MTases Location: 97959-98253 bp Feature: domain Description: AdoMet_MTases Location: 97959-982 53 bp Feature: gene Location: 98360-98584 bp Feature: gene Location: 99876-100517 bp Ori: SYX53973.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100143-100359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100143-100359 bp Feature: gene Location: 100408-101112 bp Ori: SYX53974.1 Feature: domain Description: Rve Location: 100411-101056 bp Feature: domain Description: Rve Location: 100411-101056 bp Feature: gene Location: 101216-102016 bp Ori: SYX53975.1 Feature: domain Description: PRK13737 Location: 101219-102014 bp Feature: domain Description: PRK13737 Location: 1012 19-102 014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT-GII, Rve (COG3316), PRK13737 (conjugal transfer pilus assembly protein TraU; Provisional)