myRT

myRT report for GCA_900537995.1_Roseburia_intestinalis_strain_L1-82

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Seq: LR027880.1 Roseburia intestinalis L1-82 genome assembly, chromosome: 1 (4493348 bp)
Overview 1 RT 1: 513527-519958 bp 2 RT 2: 560428-567331 bp 3 RT 3: 585621-592648 bp 4 RT 4: 1057267-1059984 bp 5 RT 5: 1466428-1482154 bp 6 RT 6: 2712063-2715541 bp 7 RT 7: 2746194-2752014 bp 8 RT 8: 2843193-2852598 bp 9 RT 9: 3284433-3288903 bp 10 RT 10: 3552887-3557753 bp 11 RT 11: 4133003-4139765 bp Neighborhood of RT #1 [513527, 520194] PIN_3 RVT-GII GIIM MobL SLR SLR SLR SEL1 SEL1 Neighborhood of RT #2 [560428, 567366] TMAO_torS HTH_XRE TPR RVT-GII GIIM MFS_MefA_like PurR Neighborhood of RT #3 [585621, 592905] MurNAc-LAA RVT-GII GIIM pyrG HflB Neighborhood of RT #4 [1057267, 1060973] RVT-DGRs Avd_like pfam12571 Neighborhood of RT #5 [1466428, 1482165] DUF3849 PHA03411 COG4646 KOG1000 DUF1016_N YhcG_C RVT-GII GIIM ArdC YodL LPD16 NT_KNTase_like DUF4316 TTRAP Neighborhood of RT #6 [2712063, 2715541] PemK_toxin RVT-GII GIIM Neighborhood of RT #7 [2746194, 2752016] DUF1848 MFS_MefA_like RVT-GII GIIM DUF4368 SR_TndX_transposase Recombinase Zn_ribbon_recom Neighborhood of RT #8 [2843193, 2852630] YicI Sortilin-Vps10 PSII_BNR RVT-GII GIIM RHOD PRK10696 murE Neighborhood of RT #9 [3284433, 3288914] Acetyltransf_1 RVT-GII GIIM rplS trmD Neighborhood of RT #10 [3552887, 3557926] PRK05579 RVT-GII GIIM Neighborhood of RT #11 [4133003, 4139893] DUF5640 Peptidase_M64 Peptidase_M64 fn3 RVT-GII GIIM HTH_29 DDE_3 Feature: gene Location: 513527-513946 bp Ori: VCV20647.1 Feature: domain Description: PIN_3 Location: 513536-513872 bp Feature: domain Description: PIN_3 Location: 51 3536-51 3872 bp Feature: gene Location: 514034-515245 bp Feature: gene Location: 515695-516978 bp Ori: VCV20649.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 515905-516520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 5905-51 6520 bp Feature: domain Description: GIIM Note: maturase Location: 516586-516805 bp Feature: domain Description: GIIM Note: maturase Location: 51 6586-51 6805 bp Feature: gene Location: 516984-517373 bp Feature: gene Location: 517384-520194 bp Ori: VCV20651.1 Gene: esiB Feature: domain Description: MobL Location: 517387-518545 bp Feature: domain Description: MobL Location: 51 7387-51 8545 bp Feature: domain Description: SLR Location: 518716-518899 bp Feature: domain Description: SLR Location: 51 871 6-51 8899 bp Feature: domain Description: SLR Location: 518926-519247 bp Feature: domain Description: SLR Location: 51 8926-51 9247 bp Feature: domain Description: SLR Location: 519298-519655 bp Feature: domain Description: SLR Location: 51 9298-51 9655 bp Feature: domain Description: SEL1 Location: 519751-519850 bp Feature: domain Description: SEL1 Location: 51 9751 -51 9850 bp Feature: domain Description: SEL1 Location: 519859-519958 bp Feature: domain Description: SEL1 Location: 51 9859-51 9958 bp Feature: gene Location: 560428-561693 bp Ori: VCV20694.1 Gene: arcB_2 Feature: domain Description: TMAO_torS Location: 560536-561679 bp Feature: domain Description: TMAO_torS Location: 560536-561 679 bp Feature: gene Location: 561777-563072 bp Ori: VCV20695.1 Feature: domain Description: HTH_XRE Location: 561810-561966 bp Feature: domain Description: HTH_XRE Location: 561 81 0-561 966 bp Feature: domain Description: TPR Location: 562632-562701 bp Feature: domain Description: TPR Location: 562632-562701 bp Feature: gene Location: 563567-564850 bp Ori: VCV20696.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563777-564392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563777-564392 bp Feature: domain Description: GIIM Note: maturase Location: 564458-564677 bp Feature: domain Description: GIIM Note: maturase Location: 564458-564677 bp Feature: gene Location: 565085-566323 bp Ori: VCV20697.1 Feature: domain Description: MFS_MefA_like Location: 565124-566267 bp Feature: domain Description: MFS_MefA_like Location: 5651 24-566267 bp Feature: gene Location: 566347-567366 bp Ori: VCV20698.1 Gene: cytR_1 Feature: domain Description: PurR Location: 566353-567331 bp Feature: domain Description: PurR Location: 566353-567331 bp Feature: gene Location: 585621-585794 bp Feature: gene Location: 585835-586929 bp Ori: VCV20717.1 Gene: lytC_1 Feature: domain Description: MurNAc-LAA Location: 586315-586909 bp Feature: domain Description: MurNAc-LAA Location: 58631 5-586909 bp Feature: gene Location: 587493-588776 bp Ori: VCV20718.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587703-588318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587703-58831 8 bp Feature: domain Description: GIIM Note: maturase Location: 588384-588603 bp Feature: domain Description: GIIM Note: maturase Location: 588384-588603 bp Feature: gene Location: 588870-590477 bp Ori: VCV20719.1 Gene: pyrG Feature: domain Description: pyrG Location: 588879-590469 bp Feature: domain Description: pyrG Location: 588879-590469 bp Feature: gene Location: 590746-592905 bp Ori: VCV20720.1 Gene: ftsH4_1 Feature: domain Description: HflB Location: 590902-592648 bp Feature: domain Description: HflB Location: 590902-592648 bp Feature: gene Location: 1057267-1057467 bp Feature: gene Location: 1057460-1057681 bp Feature: gene Location: 1057678-1058817 bp Ori: VCV21108.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1057954-1058578 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 057954-1 058578 bp Feature: gene Location: 1059208-1059618 bp Ori: VCV21109.1 Feature: domain Description: Avd_like Location: 1059274-1059598 bp Feature: domain Description: Avd_like Location: 1 059274-1 059598 bp Feature: gene Location: 1059678-1060973 bp Ori: VCV21110.1 Feature: domain Description: pfam12571 Location: 1059681-1059984 bp Feature: domain Description: pfam1 2571 Location: 1 059681 -1 059984 bp Feature: gene Location: 1466428-1474947 bp Ori: VCV21477.1 Feature: domain Description: DUF3849 Location: 1469248-1469590 bp Feature: domain Description: DUF3849 Location: 1 469248-1 469590 bp Feature: domain Description: PHA03411 Location: 1470325-1470568 bp Feature: domain Description: PHA0341 1 Location: 1 470325-1 470568 bp Feature: domain Description: COG4646 Location: 1470877-1473469 bp Feature: domain Description: COG4646 Location: 1 470877-1 473469 bp Feature: domain Description: KOG1000 Location: 1473820-1474027 bp Feature: domain Description: KOG1 000 Location: 1 473820-1 474027 bp Feature: gene Location: 1475119-1476150 bp Ori: VCV21478.1 Feature: domain Description: DUF1016_N Location: 1475167-1475569 bp Feature: domain Description: DUF1 01 6_N Location: 1 4751 67-1 475569 bp Feature: domain Description: YhcG_C Location: 1475644-1476100 bp Feature: domain Description: YhcG_C Location: 1 475644-1 4761 00 bp Feature: gene Location: 1476713-1477996 bp Ori: VCV21479.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1476923-1477538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 476923-1 477538 bp Feature: domain Description: GIIM Note: maturase Location: 1477604-1477823 bp Feature: domain Description: GIIM Note: maturase Location: 1 477604-1 477823 bp Feature: gene Location: 1478108-1481956 bp Ori: VCV21480.1 Feature: domain Description: ArdC Location: 1478342-1478927 bp Feature: domain Description: ArdC Location: 1 478342-1 478927 bp Feature: domain Description: YodL Location: 1479869-1480199 bp Feature: domain Description: YodL Location: 1 479869-1 4801 99 bp Feature: domain Description: LPD16 Location: 1480358-1480631 bp Feature: domain Description: LPD1 6 Location: 1 480358-1 480631 bp Feature: domain Description: NT_KNTase_like Location: 1480784-1480976 bp Feature: domain Description: NT_KNTase_like Location: 1 480784-1 480976 bp Feature: domain Description: DUF4316 Location: 1481732-1481879 bp Feature: domain Description: DUF431 6 Location: 1 481 732-1 481 879 bp Feature: gene Location: 1481959-1482165 bp Ori: VCV21481.1 Feature: domain Description: TTRAP Location: 1481974-1482154 bp Feature: domain Description: TTRAP Location: 1 481 974-1 4821 54 bp Feature: gene Location: 2712063-2712311 bp Feature: gene Location: 2712395-2712781 bp Ori: VCV22663.1 Gene: ndoA_3 Feature: domain Description: PemK_toxin Location: 2712410-2712752 bp Feature: domain Description: PemK_toxin Location: 271 241 0-271 2752 bp Feature: gene Location: 2713021-2714304 bp Ori: VCV22664.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2713231-2713846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 3231 -271 3846 bp Feature: domain Description: GIIM Note: maturase Location: 2713906-2714125 bp Feature: domain Description: GIIM Note: maturase Location: 271 3906-271 41 25 bp Feature: gene Location: 2714724-2715110 bp Feature: gene Location: 2715119-2715541 bp Feature: gene Location: 2746194-2747096 bp Ori: VCV22706.1 Feature: domain Description: DUF1848 Location: 2746200-2746977 bp Feature: domain Description: DUF1 848 Location: 2746200-2746977 bp Feature: gene Location: 2747118-2748305 bp Ori: VCV22707.1 Feature: domain Description: MFS_MefA_like Location: 2747154-2748282 bp Feature: domain Description: MFS_MefA_like Location: 27471 54-2748282 bp Feature: gene Location: 2748547-2749830 bp Ori: VCV22708.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748757-2749372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748757-2749372 bp Feature: domain Description: GIIM Note: maturase Location: 2749432-2749648 bp Feature: domain Description: GIIM Note: maturase Location: 2749432-2749648 bp Feature: gene Location: 2750364-2750867 bp Ori: VCV22709.1 Feature: domain Description: DUF4368 Location: 2750667-2750850 bp Feature: domain Description: DUF4368 Location: 2750667-2750850 bp Feature: gene Location: 2750937-2752016 bp Ori: VCV22710.1 Feature: domain Description: SR_TndX_transposase Location: 2750973-2751390 bp Feature: domain Description: SR_TndX_transposase Location: 2750973-2751 390 bp Feature: domain Description: Recombinase Location: 2751492-2751840 bp Feature: domain Description: Recombinase Location: 2751 492-2751 840 bp Feature: domain Description: Zn_ribbon_recom Location: 2751882-2752014 bp Feature: domain Description: Zn_ribbon_recom Location: 2751 882-275201 4 bp Feature: gene Location: 2843193-2845262 bp Ori: VCV22799.1 Feature: domain Description: YicI Location: 2843496-2845251 bp Feature: domain Description: YicI Location: 2843496-2845251 bp Feature: gene Location: 2845384-2847708 bp Ori: VCV22800.1 Feature: domain Description: Sortilin-Vps10 Location: 2845675-2846032 bp Feature: domain Description: Sortilin-Vps1 0 Location: 2845675-2846032 bp Feature: domain Description: PSII_BNR Location: 2847142-2847277 bp Feature: domain Description: PSII_BNR Location: 28471 42-2847277 bp Feature: gene Location: 2847941-2849224 bp Ori: VCV22801.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2848151-2848766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28481 51 -2848766 bp Feature: domain Description: GIIM Note: maturase Location: 2848832-2849051 bp Feature: domain Description: GIIM Note: maturase Location: 2848832-2849051 bp Feature: gene Location: 2849835-2851082 bp Ori: VCV22802.1 Gene: ttcA_3 Feature: domain Description: RHOD Location: 2849955-2850207 bp Feature: domain Description: RHOD Location: 2849955-2850207 bp Feature: domain Description: PRK10696 Location: 2850288-2851023 bp Feature: domain Description: PRK1 0696 Location: 2850288-2851 023 bp Feature: gene Location: 2851110-2852630 bp Ori: VCV22803.1 Gene: murE_2 Feature: domain Description: murE Location: 2851149-2852598 bp Feature: domain Description: murE Location: 2851 1 49-2852598 bp Feature: gene Location: 3284433-3285173 bp Ori: VCV23180.1 Feature: domain Description: Acetyltransf_1 Location: 3284868-3285132 bp Feature: domain Description: Acetyltransf_1 Location: 3284868-32851 32 bp Feature: gene Location: 3285412-3285846 bp Feature: gene Location: 3285904-3287187 bp Ori: VCV23182.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3286114-3286729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32861 1 4-3286729 bp Feature: domain Description: GIIM Note: maturase Location: 3286795-3287014 bp Feature: domain Description: GIIM Note: maturase Location: 3286795-328701 4 bp Feature: gene Location: 3287715-3288068 bp Ori: VCV23183.1 Gene: rplS Feature: domain Description: rplS Location: 3287730-3288060 bp Feature: domain Description: rplS Location: 3287730-3288060 bp Feature: gene Location: 3288198-3288914 bp Ori: VCV23184.1 Gene: trmD Feature: domain Description: trmD Location: 3288201-3288903 bp Feature: domain Description: trmD Location: 3288201 -3288903 bp Feature: gene Location: 3552887-3555181 bp Feature: gene Location: 3555238-3556437 bp Ori: VCV23410.1 Gene: coaBC Feature: domain Description: PRK05579 Location: 3555241-3556417 bp Feature: domain Description: PRK05579 Location: 3555241 -355641 7 bp Feature: gene Location: 3556643-3557926 bp Ori: VCV23411.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3556853-3557468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3556853-3557468 bp Feature: domain Description: GIIM Note: maturase Location: 3557534-3557753 bp Feature: domain Description: GIIM Note: maturase Location: 3557534-3557753 bp Feature: gene Location: 4133003-4133356 bp Ori: VCV23925.1 Feature: domain Description: DUF5640 Location: 4133084-4133327 bp Feature: domain Description: DUF5640 Location: 41 33084-41 33327 bp Feature: gene Location: 4134023-4137667 bp Ori: VCV23926.1 Feature: domain Description: Peptidase_M64 Location: 4135079-4135265 bp Feature: domain Description: Peptidase_M64 Location: 41 35079-41 35265 bp Feature: domain Description: Peptidase_M64 Location: 4135508-4135760 bp Feature: domain Description: Peptidase_M64 Location: 41 35508-41 35760 bp Feature: domain Description: fn3 Location: 4137377-4137599 bp Feature: domain Description: fn3 Location: 41 37377-41 37599 bp Feature: gene Location: 4137896-4138642 bp Ori: VCV23927.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4137905-4138184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 37905-41 381 84 bp Feature: domain Description: GIIM Note: maturase Location: 4138250-4138469 bp Feature: domain Description: GIIM Note: maturase Location: 41 38250-41 38469 bp Feature: gene Location: 4138743-4139207 bp Ori: VCV23928.1 Feature: domain Description: HTH_29 Location: 4138848-4139052 bp Feature: domain Description: HTH_29 Location: 41 38848-41 39052 bp Feature: gene Location: 4139204-4139893 bp Ori: VCV23929.1 Feature: domain Description: DDE_3 Location: 4139312-4139765 bp Feature: domain Description: DDE_3 Location: 41 3931 2-41 39765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_3 (pfam13470), RVT-GII, GIIM (pfam08388), MobL (pfam18555), SLR (sd00010), SEL1 (smart00671), TMAO_torS (TIGR02956), HTH_XRE (smart00530), TPR (smart00028), MFS_MefA_like (cd06173)
PurR (COG1609), MurNAc-LAA (cl02713), pyrG (PRK05380), HflB (COG0465), RVT-DGRs, Avd_like (cd16376), pfam12571 (DUF3751;Phage tail-collar fibre protein), DUF3849 (pfam12960), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class )
KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF1016_N (pfam17761), YhcG_C, ArdC (COG4227), YodL (pfam14191), LPD16 (pfam18830), NT_KNTase_like (cd05403), DUF4316 (pfam14195), TTRAP (pfam14203), PemK_toxin (pfam02452)
DUF1848 (pfam08902), DUF4368 (pfam14287), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), YicI (COG1501), Sortilin-Vps10 (pfam15902), PSII_BNR (pfam14870), RHOD (smart00450), PRK10696 (tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional)
murE (TIGR01085), Acetyltransf_1 (pfam00583), rplS (PRK05338), trmD (TIGR00088), PRK05579 (bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated), DUF5640 (pfam18692), Peptidase_M64 (pfam09471), fn3 (pfam00041), HTH_29 (pfam13551), DDE_3 (pfam13358)