myRT

myRT report for GCA_900604385.1_PRJEB28786

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Seq: LR027382.1 Alistipes sp. Marseille-P5997 genome assembly, chromosome: contig00001 (3270862 bp)
Overview 1 RT 1: 1456135-1461837 bp 2 RT 2: 1517869-1523143 bp Neighborhood of RT #1 [1456135, 1461845] BACON BACON BACON LRR_4 LRR_4 umuC RVT_N RVT-GII GIIM McrA umuC PRK10276 Neighborhood of RT #2 [1517869, 1523151] umuC RVT_N RVT-GII GIIM McrA umuC PRK10276 Feature: gene Location: 1456135-1457616 bp Feature: domain Description: BACON Location: 1456234-1456474 bp Feature: domain Description: BACON Location: 1 456234-1 456474 bp Feature: domain Description: BACON Location: 1456504-1456753 bp Feature: domain Description: BACON Location: 1 456504-1 456753 bp Feature: domain Description: BACON Location: 1456771-1457026 bp Feature: domain Description: BACON Location: 1 456771 -1 457026 bp Feature: domain Description: LRR_4 Location: 1457179-1457269 bp Feature: domain Description: LRR_4 Location: 1 4571 79-1 457269 bp Feature: domain Description: LRR_4 Location: 1457341-1457476 bp Feature: domain Description: LRR_4 Location: 1 457341 -1 457476 bp Feature: gene Location: 1457787-1458893 bp Feature: domain Description: umuC Location: 1457790-1458888 bp Feature: domain Description: umuC Location: 1 457790-1 458888 bp Feature: gene Location: 1459001-1460725 bp Feature: domain Description: RVT_N Location: 1459034-1459280 bp Feature: domain Description: RVT_N Location: 1 459034-1 459280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1459322-1459991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 459322-1 459991 bp Feature: domain Description: GIIM Note: maturase Location: 1460099-1460327 bp Feature: domain Description: GIIM Note: maturase Location: 1 460099-1 460327 bp Feature: domain Description: McrA Location: 1460393-1460672 bp Feature: domain Description: McrA Location: 1 460393-1 460672 bp Feature: gene Location: 1461237-1461398 bp Feature: domain Description: umuC Location: 1461240-1461369 bp Feature: domain Description: umuC Location: 1 461 240-1 461 369 bp Feature: gene Location: 1461405-1461845 bp Feature: domain Description: PRK10276 Location: 1461435-1461837 bp Feature: domain Description: PRK1 0276 Location: 1 461 435-1 461 837 bp Feature: gene Location: 1517869-1518669 bp Feature: gene Location: 1519093-1520199 bp Feature: domain Description: umuC Location: 1519096-1520194 bp Feature: domain Description: umuC Location: 1 51 9096-1 5201 94 bp Feature: gene Location: 1520307-1522031 bp Feature: domain Description: RVT_N Location: 1520340-1520586 bp Feature: domain Description: RVT_N Location: 1 520340-1 520586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1520628-1521297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 520628-1 521 297 bp Feature: domain Description: GIIM Note: maturase Location: 1521405-1521633 bp Feature: domain Description: GIIM Note: maturase Location: 1 521 405-1 521 633 bp Feature: domain Description: McrA Location: 1521699-1521978 bp Feature: domain Description: McrA Location: 1 521 699-1 521 978 bp Feature: gene Location: 1522543-1522704 bp Feature: domain Description: umuC Location: 1522546-1522675 bp Feature: domain Description: umuC Location: 1 522546-1 522675 bp Feature: gene Location: 1522711-1523151 bp Feature: domain Description: PRK10276 Location: 1522741-1523143 bp Feature: domain Description: PRK1 0276 Location: 1 522741 -1 5231 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BACON (pfam13004), LRR_4 (pfam12799), umuC (PRK03609), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)