myRT

myRT report for GCA_900618245.1_paerg000

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Seq: LR130528.1 Pseudomonas aeruginosa isolate paerg000 genome assembly, chromosome: 0 (6493562 bp)
Overview 1 RT 1: 619171-629479 bp 2 RT 2: 645737-653913 bp 3 RT 3: 5900209-5907134 bp Neighborhood of RT #1 [619171, 629481] COG3177 RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [645737, 653927] PRK10770 LptD RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [5900209, 5907217] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 619171-620292 bp Ori: VDK90899.1 Gene: fic Feature: domain Description: COG3177 Location: 619189-620281 bp Feature: domain Description: COG31 77 Location: 61 91 89-620281 bp Feature: gene Location: 620551-620715 bp Feature: gene Location: 621018-621968 bp Ori: VDK90903.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621021-621264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 621 021 -621 264 bp Feature: domain Description: GIIM Note: maturase Location: 621318-621549 bp Feature: domain Description: GIIM Note: maturase Location: 621 31 8-621 549 bp Feature: domain Description: HNH Note: nucleases Location: 621801-621939 bp Feature: domain Description: HNH Note: nucleases Location: 621 801 -621 939 bp Feature: gene Location: 623784-627521 bp Ori: VDK90905.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 623892-624549 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 623892-624549 bp Feature: domain Description: PRK09776 Location: 624762-625233 bp Feature: domain Description: PRK09776 Location: 624762-625233 bp Feature: domain Description: PAS Location: 625290-625815 bp Feature: domain Description: PAS Location: 625290-62581 5 bp Feature: domain Description: PRK10060 Location: 625824-627471 bp Feature: domain Description: PRK1 0060 Location: 625824-627471 bp Feature: gene Location: 627628-629481 bp Ori: VDK90907.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 627640-629479 bp Feature: domain Description: PRK05658 Location: 627640-629479 bp Feature: gene Location: 645737-647029 bp Ori: VDK90944.1 Gene: surA Feature: domain Description: PRK10770 Location: 645827-647021 bp Feature: domain Description: PRK1 0770 Location: 645827-647021 bp Feature: gene Location: 647010-649793 bp Ori: VDK90946.1 Gene: lptD Feature: domain Description: LptD Location: 647205-649779 bp Feature: domain Description: LptD Location: 647205-649779 bp Feature: gene Location: 649926-651236 bp Ori: VDK90948.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649929-650505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649929-650505 bp Feature: domain Description: YkfC Location: 650712-650865 bp Feature: domain Description: YkfC Location: 65071 2-650865 bp Feature: domain Description: HNH Note: nucleases Location: 651042-651180 bp Feature: domain Description: HNH Note: nucleases Location: 651 042-651 1 80 bp Feature: gene Location: 652480-652614 bp Feature: gene Location: 652911-653927 bp Ori: VDK90952.1 Feature: domain Description: COG3178 Location: 652917-653913 bp Feature: domain Description: COG31 78 Location: 65291 7-65391 3 bp Feature: gene Location: 5900209-5901753 bp Ori: VDL03082.1 Feature: domain Description: CHD Location: 5900425-5900839 bp Feature: domain Description: CHD Location: 5900425-5900839 bp Feature: domain Description: CHD Location: 5901067-5901556 bp Feature: domain Description: CHD Location: 5901 067-5901 556 bp Feature: gene Location: 5902838-5903017 bp Feature: gene Location: 5903749-5905017 bp Ori: VDL03092.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5903962-5904619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5903962-590461 9 bp Feature: domain Description: GIIM Note: maturase Location: 5904697-5904919 bp Feature: domain Description: GIIM Note: maturase Location: 5904697-590491 9 bp Feature: gene Location: 5905406-5906047 bp Ori: VDL03096.1 Feature: domain Description: DUF772 Location: 5905556-5905751 bp Feature: domain Description: DUF772 Location: 5905556-5905751 bp Feature: gene Location: 5906390-5907217 bp Ori: VDL03100.1 Feature: domain Description: ABC_phnC Location: 5906420-5907134 bp Feature: domain Description: ABC_phnC Location: 5906420-59071 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)
LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), CHD (cd07302), DUF772 (pfam05598), ABC_phnC (TIGR02315)