myRT

myRT report for GCA_900635445.1_28869_A02

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Seq: LR134117.1 Serratia odorifera strain NCTC11214 genome assembly, chromosome: 1 (5272556 bp)
Overview 1 RT 1: 117790-121514 bp 2 RT 2: 441462-445722 bp 3 RT 3: 923036-927224 bp 4 RT 4: 3163913-3170108 bp 5 RT 5: 4032362-4038331 bp 6 RT 6: 5185153-5191733 bp Neighborhood of RT #1 [117790, 121630] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 LZ_Tnp_IS66 Neighborhood of RT #2 [441462, 445751] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM type_I_hlyD COG3436 TnpB_IS66 Neighborhood of RT #3 [923036, 927224] TnpB_IS66 type_I_hlyD COG3436 RVT-GII RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #4 [3163913, 3170110] TnpB_IS66 type_I_hlyD COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C YejM Neighborhood of RT #5 [4032362, 4038546] MhpC PQQ_membr_DH RVT-GII GIIM Gcd PQQ_syn_pqqF Neighborhood of RT #6 [5185153, 5191735] PRK01122 PRK00315 RVT-GII GIIM PRK10490 PRK10529 Feature: gene Location: 117790-118047 bp Feature: gene Location: 118153-118851 bp Ori: VDZ51321.1 Feature: domain Description: DDE_Tnp_IS66 Location: 118159-118699 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 81 59-1 1 8699 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 118720-118831 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 8720-1 1 8831 bp Feature: gene Location: 119027-120268 bp Ori: VDZ51323.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119231-119888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9231 -1 1 9888 bp Feature: domain Description: GIIM Note: maturase Location: 119969-120188 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 9969-1 201 88 bp Feature: gene Location: 120751-121215 bp Ori: VDZ51325.1 Feature: domain Description: COG3436 Location: 120757-121165 bp Feature: domain Description: COG3436 Location: 1 20757-1 21 1 65 bp Feature: gene Location: 121310-121630 bp Ori: VDZ51327.1 Feature: domain Description: LZ_Tnp_IS66 Location: 121448-121514 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 21 448-1 21 51 4 bp Feature: gene Location: 441462-441899 bp Feature: gene Location: 441917-442615 bp Ori: VDZ52044.1 Feature: domain Description: DDE_Tnp_IS66 Location: 441926-442460 bp Feature: domain Description: DDE_Tnp_IS66 Location: 441 926-442460 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 442484-442595 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 442484-442595 bp Feature: gene Location: 442791-444032 bp Ori: VDZ52046.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442995-443652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442995-443652 bp Feature: domain Description: GIIM Note: maturase Location: 443733-443952 bp Feature: domain Description: GIIM Note: maturase Location: 443733-443952 bp Feature: gene Location: 444515-445384 bp Ori: VDZ52048.1 Feature: domain Description: type_I_hlyD Location: 444536-444815 bp Feature: domain Description: type_I_hlyD Location: 444536-44481 5 bp Feature: domain Description: COG3436 Location: 444860-445334 bp Feature: domain Description: COG3436 Location: 444860-445334 bp Feature: gene Location: 445404-445751 bp Ori: VDZ52050.1 Feature: domain Description: TnpB_IS66 Location: 445431-445722 bp Feature: domain Description: TnpB_IS66 Location: 445431 -445722 bp Feature: gene Location: 923036-923329 bp Ori: VDZ53306.1 Feature: domain Description: TnpB_IS66 Location: 923039-923300 bp Feature: domain Description: TnpB_IS66 Location: 923039-923300 bp Feature: gene Location: 923349-924218 bp Ori: VDZ53310.1 Feature: domain Description: type_I_hlyD Location: 923370-923649 bp Feature: domain Description: type_I_hlyD Location: 923370-923649 bp Feature: domain Description: COG3436 Location: 923694-924168 bp Feature: domain Description: COG3436 Location: 923694-9241 68 bp Feature: gene Location: 924799-925110 bp Ori: VDZ53314.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924907-925093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924907-925093 bp Feature: gene Location: 925055-925381 bp Ori: VDZ53317.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 925076-925331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 925076-925331 bp Feature: gene Location: 926121-926819 bp Ori: VDZ53320.1 Feature: domain Description: DDE_Tnp_IS66 Location: 926130-926664 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9261 30-926664 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 926688-926799 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 926688-926799 bp Feature: gene Location: 927006-927224 bp Feature: gene Location: 3163913-3164260 bp Ori: VDZ60562.1 Feature: domain Description: TnpB_IS66 Location: 3163940-3164231 bp Feature: domain Description: TnpB_IS66 Location: 31 63940-31 64231 bp Feature: gene Location: 3164280-3165149 bp Ori: VDZ60565.1 Feature: domain Description: type_I_hlyD Location: 3164301-3164580 bp Feature: domain Description: type_I_hlyD Location: 31 64301 -31 64580 bp Feature: domain Description: COG3436 Location: 3164625-3165099 bp Feature: domain Description: COG3436 Location: 31 64625-31 65099 bp Feature: gene Location: 3165633-3166874 bp Ori: VDZ60568.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3165837-3166494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 65837-31 66494 bp Feature: domain Description: GIIM Note: maturase Location: 3166575-3166794 bp Feature: domain Description: GIIM Note: maturase Location: 31 66575-31 66794 bp Feature: gene Location: 3167050-3167748 bp Ori: VDZ60571.1 Feature: domain Description: DDE_Tnp_IS66 Location: 3167059-3167593 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 67059-31 67593 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3167617-3167728 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31 6761 7-31 67728 bp Feature: gene Location: 3168323-3170110 bp Ori: VDZ60575.1 Gene: yejM Feature: domain Description: YejM Location: 3168326-3170108 bp Feature: domain Description: YejM Location: 31 68326-31 701 08 bp Feature: gene Location: 4032362-4033201 bp Ori: VDZ63298.1 Feature: domain Description: MhpC Location: 4032425-4033181 bp Feature: domain Description: MhpC Location: 4032425-40331 81 bp Feature: gene Location: 4033273-4034685 bp Ori: VDZ63300.1 Gene: quiA_1 Feature: domain Description: PQQ_membr_DH Location: 4033288-4034680 bp Feature: domain Description: PQQ_membr_DH Location: 4033288-4034680 bp Feature: gene Location: 4035165-4035659 bp Ori: VDZ63302.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4035168-4035279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40351 68-4035279 bp Feature: domain Description: GIIM Note: maturase Location: 4035360-4035579 bp Feature: domain Description: GIIM Note: maturase Location: 4035360-4035579 bp Feature: gene Location: 4036892-4037569 bp Ori: VDZ63304.1 Gene: quiA_2 Feature: domain Description: Gcd Location: 4036940-4037528 bp Feature: domain Description: Gcd Location: 4036940-4037528 bp Feature: gene Location: 4037758-4038546 bp Ori: VDZ63306.1 Feature: domain Description: PQQ_syn_pqqF Location: 4037794-4038331 bp Feature: domain Description: PQQ_syn_pqqF Location: 4037794-4038331 bp Feature: gene Location: 5185153-5185818 bp Ori: VDZ65838.1 Gene: kdpB_2 Feature: domain Description: PRK01122 Location: 5185156-5185810 bp Feature: domain Description: PRK01 1 22 Location: 51 851 56-51 8581 0 bp Feature: gene Location: 5185837-5186406 bp Ori: VDZ65840.1 Feature: domain Description: PRK00315 Location: 5185840-5186401 bp Feature: domain Description: PRK0031 5 Location: 51 85840-51 86401 bp Feature: gene Location: 5188098-5189339 bp Ori: VDZ65843.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5188302-5188959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 88302-51 88959 bp Feature: domain Description: GIIM Note: maturase Location: 5189040-5189259 bp Feature: domain Description: GIIM Note: maturase Location: 51 89040-51 89259 bp Feature: gene Location: 5189834-5191039 bp Ori: VDZ65845.1 Gene: kdpD Feature: domain Description: PRK10490 Location: 5189873-5191013 bp Feature: domain Description: PRK1 0490 Location: 51 89873-51 91 01 3 bp Feature: gene Location: 5191046-5191735 bp Ori: VDZ65847.1 Gene: kdpE Feature: domain Description: PRK10529 Location: 5191064-5191733 bp Feature: domain Description: PRK1 0529 Location: 51 91 064-51 91 733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), LZ_Tnp_IS66 (pfam13007), type_I_hlyD (TIGR01843), TnpB_IS66 (pfam05717), YejM (COG3083), MhpC (COG0596)
PQQ_membr_DH (TIGR03074), Gcd (COG4993), PQQ_syn_pqqF (TIGR02110), PRK01122 (potassium-transporting ATPase subunit KdpB), PRK00315 (potassium-transporting ATPase subunit KdpC), PRK10490 (sensor protein KdpD; Provisional), PRK10529 (DNA-binding transcriptional activator KdpE; Provisional)