myRT

myRT report for GCA_900635565.1_31136_G01

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Seq: LR134146.1 Salmonella enterica subsp. enterica strain NCTC6759 genome assembly, chromosome: 1 (4759612 bp)
Overview 1 RT 1: 4140194-4146031 bp 2 RT 2: 4749003-4754451 bp Neighborhood of RT #1 [4140194, 4146036] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL groES Neighborhood of RT #2 [4749003, 4754522] PRK10216 PRK10473 RVT-Retrons INT_P4_C Feature: gene Location: 4140194-4140547 bp Ori: VEA26473.1 Feature: domain Description: DUF4156 Location: 4140263-4140539 bp Feature: domain Description: DUF41 56 Location: 41 40263-41 40539 bp Feature: gene Location: 4140910-4141137 bp Ori: VEA26474.1 Feature: domain Description: DUF2188 Location: 4140925-4141102 bp Feature: domain Description: DUF21 88 Location: 41 40925-41 41 1 02 bp Feature: gene Location: 4141286-4142959 bp Ori: VEA26475.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4141349-4141583 bp Feature: domain Description: RVT_N Location: 41 41 349-41 41 583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4141637-4142282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 41 637-41 42282 bp Feature: domain Description: GIIM Note: maturase Location: 4142336-4142567 bp Feature: domain Description: GIIM Note: maturase Location: 41 42336-41 42567 bp Feature: domain Description: HNHc Note: nucleases Location: 4142777-4142933 bp Feature: domain Description: HNHc Note: nucleases Location: 41 42777-41 42933 bp Feature: gene Location: 4144053-4145699 bp Ori: VEA26476.1 Gene: groEL Feature: domain Description: groEL Location: 4144059-4145685 bp Feature: domain Description: groEL Location: 41 44059-41 45685 bp Feature: gene Location: 4145743-4146036 bp Ori: VEA26477.1 Gene: groES Feature: domain Description: groES Location: 4145746-4146031 bp Feature: domain Description: groES Location: 41 45746-41 46031 bp Feature: gene Location: 4749003-4749962 bp Ori: VEA27202.1 Gene: yidZ Feature: domain Description: PRK10216 Location: 4749006-4749957 bp Feature: domain Description: PRK1 021 6 Location: 4749006-4749957 bp Feature: gene Location: 4749931-4751118 bp Ori: VEA27204.1 Gene: mdtL Feature: domain Description: PRK10473 Location: 4749934-4751110 bp Feature: domain Description: PRK1 0473 Location: 4749934-4751 1 1 0 bp Feature: gene Location: 4751920-4752855 bp Ori: VEA27206.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4752031-4752616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4752031 -475261 6 bp Feature: gene Location: 4752855-4753817 bp Feature: gene Location: 4754142-4754522 bp Ori: VEA27210.1 Gene: intA_5 Feature: domain Description: INT_P4_C Location: 4754148-4754451 bp Feature: domain Description: INT_P4_C Location: 47541 48-4754451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533), PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter)
RVT-Retrons, INT_P4_C (cd00801)