myRT

myRT report for GCA_900636045.1_38656_G02

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Seq: LR134216.1 Escherichia coli strain NCTC10973 genome assembly, chromosome: 1 (4647667 bp)
Overview 1 RT 1: 1494395-1498506 bp 2 RT 2: 1904099-1908232 bp 3 RT 3: 4015100-4021144 bp Neighborhood of RT #1 [1494395, 1498511] InsE PHA02517 RVT-GII GIIM PRK15450 PRK02971 Neighborhood of RT #2 [1904099, 1908243] HOK_GEF Ogr_Delta RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [4015100, 4021155] fecE RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 1494395-1494697 bp Ori: VEC27928.1 Feature: domain Description: InsE Location: 1494404-1494686 bp Feature: domain Description: InsE Location: 1 494404-1 494686 bp Feature: gene Location: 1494910-1495149 bp Ori: VEC27932.1 Feature: domain Description: PHA02517 Location: 1494913-1495084 bp Feature: domain Description: PHA0251 7 Location: 1 49491 3-1 495084 bp Feature: gene Location: 1495741-1497264 bp Ori: VEC27936.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1496014-1496746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 49601 4-1 496746 bp Feature: domain Description: GIIM Note: maturase Location: 1496821-1497019 bp Feature: domain Description: GIIM Note: maturase Location: 1 496821 -1 49701 9 bp Feature: gene Location: 1497865-1498131 bp Ori: VEC27940.1 Gene: pmrD Feature: domain Description: PRK15450 Location: 1497868-1498120 bp Feature: domain Description: PRK1 5450 Location: 1 497868-1 4981 20 bp Feature: gene Location: 1498125-1498511 bp Ori: VEC27944.1 Gene: arnF Feature: domain Description: PRK02971 Location: 1498128-1498506 bp Feature: domain Description: PRK02971 Location: 1 4981 28-1 498506 bp Feature: gene Location: 1904099-1904239 bp Ori: VEC29170.1 Feature: domain Description: HOK_GEF Location: 1904126-1904231 bp Feature: domain Description: HOK_GEF Location: 1 9041 26-1 904231 bp Feature: gene Location: 1904431-1904691 bp Ori: VEC29173.1 Feature: domain Description: Ogr_Delta Location: 1904440-1904581 bp Feature: domain Description: Ogr_Delta Location: 1 904440-1 904581 bp Feature: gene Location: 1905374-1906897 bp Ori: VEC29176.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1905647-1906379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 905647-1 906379 bp Feature: domain Description: GIIM Note: maturase Location: 1906454-1906652 bp Feature: domain Description: GIIM Note: maturase Location: 1 906454-1 906652 bp Feature: gene Location: 1907489-1907728 bp Ori: VEC29179.1 Feature: domain Description: PHA02517 Location: 1907492-1907663 bp Feature: domain Description: PHA0251 7 Location: 1 907492-1 907663 bp Feature: gene Location: 1907941-1908243 bp Ori: VEC29182.1 Feature: domain Description: InsE Location: 1907950-1908232 bp Feature: domain Description: InsE Location: 1 907950-1 908232 bp Feature: gene Location: 4015100-4015867 bp Ori: VEC33970.1 Gene: fecE Feature: domain Description: fecE Location: 4015103-4015865 bp Feature: domain Description: fecE Location: 401 51 03-401 5865 bp Feature: gene Location: 4016425-4016682 bp Feature: gene Location: 4017333-4018856 bp Ori: VEC33975.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4017606-4018338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 7606-401 8338 bp Feature: domain Description: GIIM Note: maturase Location: 4018413-4018611 bp Feature: domain Description: GIIM Note: maturase Location: 401 841 3-401 861 1 bp Feature: gene Location: 4019448-4019687 bp Ori: VEC33978.1 Feature: domain Description: PHA02517 Location: 4019451-4019622 bp Feature: domain Description: PHA0251 7 Location: 401 9451 -401 9622 bp Feature: gene Location: 4020004-4021155 bp Ori: VEC33981.1 Gene: tra8_2 Feature: domain Description: HTH_38 Location: 4020013-4020127 bp Feature: domain Description: HTH_38 Location: 402001 3-40201 27 bp Feature: domain Description: Tra8 Location: 4020163-4021144 bp Feature: domain Description: Tra8 Location: 40201 63-4021 1 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK15450 (signal transduction protein PmrD; Provisional), PRK02971 (4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional), HOK_GEF (pfam01848), Ogr_Delta (pfam04606), fecE (PRK11231), HTH_38 (pfam13936)
Tra8 (COG2826)