myRT

myRT report for GCA_900636185.1_39282_B01

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Seq: LR134235.1 Klebsiella aerogenes strain NCTC9668 genome assembly, chromosome: 1 (5768342 bp)
Overview 1 RT 1: 158544-164440 bp 2 RT 2: 507169-512437 bp 3 RT 3: 1505479-1509858 bp Neighborhood of RT #1 [158544, 164440] COG3792 PRK09951 RVT_N RVT-GII GIIM DUF4238 Neighborhood of RT #2 [507169, 512460] Tra5 RVT-Retrons GAF_2 GGDEF Neighborhood of RT #3 [1505479, 1509899] PRK09692 INT_P4_C RVT-Retrons rve_3 Feature: gene Location: 158544-158909 bp Ori: VEC94947.1 Feature: domain Description: COG3792 Location: 158547-158907 bp Feature: domain Description: COG3792 Location: 1 58547-1 58907 bp Feature: gene Location: 159574-159912 bp Ori: VEC94948.1 Gene: yedK_2 Feature: domain Description: PRK09951 Location: 159577-159901 bp Feature: domain Description: PRK09951 Location: 1 59577-1 59901 bp Feature: gene Location: 160486-161976 bp Ori: VEC94949.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 160528-160771 bp Feature: domain Description: RVT_N Location: 1 60528-1 60771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160816-161464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6081 6-1 61 464 bp Feature: domain Description: GIIM Note: maturase Location: 161524-161752 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 524-1 61 752 bp Feature: gene Location: 162802-163806 bp Ori: VEC94950.1 Feature: domain Description: DUF4238 Location: 162841-163726 bp Feature: domain Description: DUF4238 Location: 1 62841 -1 63726 bp Feature: gene Location: 163880-164440 bp Feature: gene Location: 507169-507588 bp Ori: VEC95301.1 Feature: domain Description: Tra5 Location: 507172-507571 bp Feature: domain Description: Tra5 Location: 5071 72-507571 bp Feature: gene Location: 507676-508389 bp Feature: gene Location: 508376-509566 bp Ori: VEC95303.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 508523-509096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 508523-509096 bp Feature: gene Location: 509988-510353 bp Feature: gene Location: 511447-512460 bp Ori: VEC95305.1 Gene: yeaP_1 Feature: domain Description: GAF_2 Location: 511498-511909 bp Feature: domain Description: GAF_2 Location: 51 1 498-51 1 909 bp Feature: domain Description: GGDEF Location: 511975-512437 bp Feature: domain Description: GGDEF Location: 51 1 975-51 2437 bp Feature: gene Location: 1505479-1506171 bp Ori: VEC96234.1 Gene: intS_1 Feature: domain Description: PRK09692 Location: 1505488-1506133 bp Feature: domain Description: PRK09692 Location: 1 505488-1 5061 33 bp Feature: gene Location: 1506270-1506662 bp Ori: VEC96235.1 Gene: intS_2 Feature: domain Description: INT_P4_C Location: 1506273-1506624 bp Feature: domain Description: INT_P4_C Location: 1 506273-1 506624 bp Feature: gene Location: 1506826-1507986 bp Ori: VEC96236.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1507069-1507717 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 507069-1 50771 7 bp Feature: gene Location: 1508189-1509442 bp Feature: gene Location: 1509669-1509899 bp Ori: VEC96238.1 Feature: domain Description: rve_3 Location: 1509675-1509858 bp Feature: domain Description: rve_3 Location: 1 509675-1 509858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3792 (Uncharacterized protein ), PRK09951 (hypothetical protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4238 (pfam14022), Tra5 (COG2801), RVT-Retrons, GAF_2 (pfam13185), GGDEF (TIGR00254)
PRK09692 (Integrase; provisional), INT_P4_C (cd00801), rve_3 (pfam13683)