myRT

myRT report for GCA_900636225.1_39304_C01

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Seq: LR134238.1 Escherichia coli strain NCTC9044 genome assembly, chromosome: 1 (5278208 bp)
Overview 1 RT 1: 777772-784072 bp 2 RT 2: 2853115-2858435 bp 3 RT 3: 2920312-2926343 bp Neighborhood of RT #1 [777772, 784077] PHA02517 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C KdpD Neighborhood of RT #2 [2853115, 2858515] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Neighborhood of RT #3 [2920312, 2926480] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 777772-778035 bp Feature: gene Location: 778038-778484 bp Ori: VED07554.1 Feature: domain Description: PHA02517 Location: 778041-778482 bp Feature: domain Description: PHA0251 7 Location: 778041 -778482 bp Feature: gene Location: 778601-780124 bp Ori: VED07556.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778874-779606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778874-779606 bp Feature: domain Description: GIIM Note: maturase Location: 779681-779879 bp Feature: domain Description: GIIM Note: maturase Location: 779681 -779879 bp Feature: gene Location: 781764-782195 bp Ori: VED07558.1 Feature: domain Description: DDE_Tnp_IS66 Location: 781770-782040 bp Feature: domain Description: DDE_Tnp_IS66 Location: 781 770-782040 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 782061-782172 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 782061 -7821 72 bp Feature: gene Location: 782605-784077 bp Ori: VED07560.1 Gene: kdpD_1 Feature: domain Description: KdpD Location: 783391-784072 bp Feature: domain Description: KdpD Location: 783391 -784072 bp Feature: gene Location: 2853115-2853882 bp Feature: gene Location: 2854195-2855151 bp Ori: VED12188.1 Feature: domain Description: YhhI Location: 2854198-2854543 bp Feature: domain Description: YhhI Location: 28541 98-2854543 bp Feature: domain Description: YhhI Location: 2854600-2854954 bp Feature: domain Description: YhhI Location: 2854600-2854954 bp Feature: domain Description: YhhI Location: 2854954-2855134 bp Feature: domain Description: YhhI Location: 2854954-28551 34 bp Feature: gene Location: 2855683-2856933 bp Ori: VED12190.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2855887-2856544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2855887-2856544 bp Feature: domain Description: GIIM Note: maturase Location: 2856625-2856847 bp Feature: domain Description: GIIM Note: maturase Location: 2856625-2856847 bp Feature: gene Location: 2857380-2858024 bp Ori: VED12192.1 Feature: domain Description: YhhI Location: 2857383-2857746 bp Feature: domain Description: YhhI Location: 2857383-2857746 bp Feature: domain Description: YhhI Location: 2857803-2858022 bp Feature: domain Description: YhhI Location: 2857803-2858022 bp Feature: gene Location: 2858213-2858515 bp Ori: VED12194.1 Feature: domain Description: YhhI Location: 2858231-2858435 bp Feature: domain Description: YhhI Location: 2858231 -2858435 bp Feature: gene Location: 2920312-2920452 bp Ori: VED12358.1 Feature: domain Description: SfsB Location: 2920321-2920393 bp Feature: domain Description: SfsB Location: 2920321 -2920393 bp Feature: gene Location: 2920449-2920919 bp Feature: gene Location: 2921266-2924475 bp Ori: VED12362.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2921794-2922283 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2921 794-2922283 bp Feature: domain Description: nitrilase Location: 2923789-2924386 bp Feature: domain Description: nitrilase Location: 2923789-2924386 bp Feature: gene Location: 2924791-2925573 bp Ori: VED12363.1 Feature: domain Description: AbiEi_3_N Location: 2924803-2925064 bp Feature: domain Description: AbiEi_3_N Location: 2924803-2925064 bp Feature: domain Description: AbiEi_3 Location: 2925076-2925532 bp Feature: domain Description: AbiEi_3 Location: 2925076-2925532 bp Feature: gene Location: 2925560-2926480 bp Ori: VED12365.1 Feature: domain Description: AbiEii Location: 2925602-2926343 bp Feature: domain Description: AbiEii Location: 2925602-2926343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), KdpD (pfam02702), YhhI (COG5433), SfsB (COG3423), RVT-UG5, nitrilase (cl11424)
AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)