myRT

myRT report for GCA_900636295.1_40295_G02

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Seq: LR134247.1 Escherichia coli strain NCTC9040 genome assembly, chromosome: 1 (4984892 bp)
Overview 1 RT 1: 43831-48580 bp 2 RT 2: 68058-74529 bp 3 RT 3: 1815874-1820339 bp 4 RT 4: 1826250-1830797 bp 5 RT 5: 2530079-2533996 bp 6 RT 6: 3872050-3878562 bp 7 RT 7: 4320872-4325958 bp Neighborhood of RT #1 [43831, 48774] InsE HTH_38 Tra8 RVT-GII GIIM Tra5 InsE Neighborhood of RT #2 [68058, 74534] rpoZ gmk RVT-GII GIIM PHA02517 ligB Neighborhood of RT #3 [1815874, 1820353] Tra8 PHA02517 RVT-GII GIIM PHA02517 IS5 Neighborhood of RT #4 [1826250, 1830817] TagG PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #5 [2530079, 2534007] COG4453 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [3872050, 3878579] HTH_38 Tra8 PHA02517 RVT-GII GIIM IS285 DDE_Tnp_IS66_C Neighborhood of RT #7 [4320872, 4325972] fecE RVT-GII GIIM PHA02517 InsE Feature: gene Location: 43831-44169 bp Ori: VED40899.1 Feature: domain Description: InsE Location: 43843-44116 bp Feature: domain Description: InsE Location: 43843-441 1 6 bp Feature: gene Location: 44089-45240 bp Ori: VED40901.1 Gene: tra8_2_1 Feature: domain Description: HTH_38 Location: 44098-44212 bp Feature: domain Description: HTH_38 Location: 44098-4421 2 bp Feature: domain Description: Tra8 Location: 44248-45229 bp Feature: domain Description: Tra8 Location: 44248-45229 bp Feature: gene Location: 46391-47914 bp Ori: VED40903.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46664-47396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46664-47396 bp Feature: domain Description: GIIM Note: maturase Location: 47471-47669 bp Feature: domain Description: GIIM Note: maturase Location: 47471 -47669 bp Feature: gene Location: 48079-48360 bp Ori: VED40905.1 Feature: domain Description: Tra5 Location: 48091-48334 bp Feature: domain Description: Tra5 Location: 48091 -48334 bp Feature: gene Location: 48391-48774 bp Ori: VED40907.1 Feature: domain Description: InsE Location: 48409-48580 bp Feature: domain Description: InsE Location: 48409-48580 bp Feature: gene Location: 68058-68333 bp Ori: VED40940.1 Gene: rpoZ Feature: domain Description: rpoZ Location: 68061-68238 bp Feature: domain Description: rpoZ Location: 68061 -68238 bp Feature: gene Location: 68388-69011 bp Ori: VED40942.1 Gene: gmk Feature: domain Description: gmk Location: 68394-69000 bp Feature: domain Description: gmk Location: 68394-69000 bp Feature: gene Location: 70751-72274 bp Ori: VED40944.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71024-71756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 024-71 756 bp Feature: domain Description: GIIM Note: maturase Location: 71831-72029 bp Feature: domain Description: GIIM Note: maturase Location: 71 831 -72029 bp Feature: gene Location: 72391-72837 bp Ori: VED40946.1 Feature: domain Description: PHA02517 Location: 72394-72835 bp Feature: domain Description: PHA0251 7 Location: 72394-72835 bp Feature: gene Location: 73017-74534 bp Ori: VED40948.1 Gene: ligB Feature: domain Description: ligB Location: 73020-74529 bp Feature: domain Description: ligB Location: 73020-74529 bp Feature: gene Location: 1815874-1816140 bp Ori: VED44607.1 Feature: domain Description: Tra8 Location: 1815877-1816129 bp Feature: domain Description: Tra8 Location: 1 81 5877-1 81 61 29 bp Feature: gene Location: 1816402-1816641 bp Ori: VED44609.1 Feature: domain Description: PHA02517 Location: 1816405-1816576 bp Feature: domain Description: PHA0251 7 Location: 1 81 6405-1 81 6576 bp Feature: gene Location: 1817233-1818756 bp Ori: VED44611.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1817506-1818238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 7506-1 81 8238 bp Feature: domain Description: GIIM Note: maturase Location: 1818313-1818511 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 831 3-1 81 851 1 bp Feature: gene Location: 1818951-1819304 bp Ori: VED44613.1 Feature: domain Description: PHA02517 Location: 1818954-1819299 bp Feature: domain Description: PHA0251 7 Location: 1 81 8954-1 81 9299 bp Feature: gene Location: 1819373-1820353 bp Ori: VED44615.1 Gene: insH_2 Feature: domain Description: IS5 Location: 1819562-1820339 bp Feature: domain Description: IS5 Location: 1 81 9562-1 820339 bp Feature: gene Location: 1826250-1827041 bp Ori: VED44627.1 Gene: wzm Feature: domain Description: TagG Location: 1826271-1827024 bp Feature: domain Description: TagG Location: 1 826271 -1 827024 bp Feature: gene Location: 1827038-1827391 bp Ori: VED44629.1 Feature: domain Description: PHA02517 Location: 1827041-1827386 bp Feature: domain Description: PHA0251 7 Location: 1 827041 -1 827386 bp Feature: gene Location: 1827586-1829109 bp Ori: VED44631.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1827859-1828591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 827859-1 828591 bp Feature: domain Description: GIIM Note: maturase Location: 1828666-1828864 bp Feature: domain Description: GIIM Note: maturase Location: 1 828666-1 828864 bp Feature: gene Location: 1829701-1829940 bp Ori: VED44633.1 Feature: domain Description: PHA02517 Location: 1829704-1829875 bp Feature: domain Description: PHA0251 7 Location: 1 829704-1 829875 bp Feature: gene Location: 1830383-1830817 bp Ori: VED44635.1 Feature: domain Description: InsE Location: 1830404-1830797 bp Feature: domain Description: InsE Location: 1 830404-1 830797 bp Feature: gene Location: 2530079-2530348 bp Ori: VED46151.1 Feature: domain Description: COG4453 Location: 2530085-2530340 bp Feature: domain Description: COG4453 Location: 2530085-2530340 bp Feature: gene Location: 2530563-2530976 bp Ori: VED46153.1 Feature: domain Description: PHA02517 Location: 2530584-2530932 bp Feature: domain Description: PHA0251 7 Location: 2530584-2530932 bp Feature: gene Location: 2531141-2532664 bp Ori: VED46155.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2531414-2532146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2531 41 4-25321 46 bp Feature: domain Description: GIIM Note: maturase Location: 2532221-2532419 bp Feature: domain Description: GIIM Note: maturase Location: 2532221 -253241 9 bp Feature: gene Location: 2533256-2533675 bp Ori: VED46157.1 Feature: domain Description: PHA02517 Location: 2533271-2533610 bp Feature: domain Description: PHA0251 7 Location: 2533271 -253361 0 bp Feature: gene Location: 2533723-2534007 bp Ori: VED46159.1 Feature: domain Description: InsE Location: 2533735-2533996 bp Feature: domain Description: InsE Location: 2533735-2533996 bp Feature: gene Location: 3872050-3873201 bp Ori: VED49112.1 Gene: tra8_2_4 Feature: domain Description: HTH_38 Location: 3872059-3872173 bp Feature: domain Description: HTH_38 Location: 3872059-38721 73 bp Feature: domain Description: Tra8 Location: 3872209-3873190 bp Feature: domain Description: Tra8 Location: 3872209-38731 90 bp Feature: gene Location: 3873463-3873702 bp Ori: VED49114.1 Feature: domain Description: PHA02517 Location: 3873466-3873637 bp Feature: domain Description: PHA0251 7 Location: 3873466-3873637 bp Feature: gene Location: 3874294-3875817 bp Ori: VED49116.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874567-3875299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874567-3875299 bp Feature: domain Description: GIIM Note: maturase Location: 3875374-3875572 bp Feature: domain Description: GIIM Note: maturase Location: 3875374-3875572 bp Feature: gene Location: 3876284-3877582 bp Ori: VED49118.1 Gene: tnpA_2 Feature: domain Description: IS285 Location: 3876314-3877472 bp Feature: domain Description: IS285 Location: 387631 4-3877472 bp Feature: gene Location: 3877800-3878579 bp Ori: VED49120.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 3878451-3878562 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3878451 -3878562 bp Feature: gene Location: 4320872-4321639 bp Ori: VED49974.1 Gene: fecE Feature: domain Description: fecE Location: 4320875-4321637 bp Feature: domain Description: fecE Location: 4320875-4321 637 bp Feature: gene Location: 4322196-4322453 bp Feature: gene Location: 4323104-4324627 bp Ori: VED49976.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4323377-4324109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4323377-43241 09 bp Feature: domain Description: GIIM Note: maturase Location: 4324184-4324382 bp Feature: domain Description: GIIM Note: maturase Location: 43241 84-4324382 bp Feature: gene Location: 4325219-4325458 bp Ori: VED49977.1 Feature: domain Description: PHA02517 Location: 4325222-4325393 bp Feature: domain Description: PHA0251 7 Location: 4325222-4325393 bp Feature: gene Location: 4325700-4325972 bp Ori: VED49978.1 Feature: domain Description: InsE Location: 4325709-4325958 bp Feature: domain Description: InsE Location: 4325709-4325958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), HTH_38 (pfam13936), Tra8 (COG2826), RVT-GII, GIIM (pfam08388), Tra5 (COG2801), rpoZ (TIGR00690), gmk (PRK14738), PHA02517 (putative transposase OrfB; Reviewed), ligB (PRK08097)
IS5 (COG3039), TagG (COG1682), COG4453 (Uncharacterized conserved protein, DUF1778 family ), IS285 (COG3328), DDE_Tnp_IS66_C (pfam13817), fecE (PRK11231)