myRT

myRT report for GCA_900636325.1_40415_H02

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Seq: LR134263.1 Staphylococcus delphini strain NCTC12225 genome assembly, chromosome: 1 (2798161 bp)
Overview 1 RT 1: 557414-562814 bp 2 RT 2: 981273-987406 bp 3 RT 3: 2106968-2113145 bp 4 RT 4: 2682843-2702680 bp Neighborhood of RT #1 [557414, 562930] PHA02517 InsE RVT-GII GIIM M20_ArgE_RocB DUF3139 Neighborhood of RT #2 [981273, 987474] MFS_MefA_like Uup Uup RVT-GII YdiL DUF3267 Neighborhood of RT #3 [2106968, 2113204] Ntox35 YdiL RVT-GII CcmA Neighborhood of RT #4 [2682843, 2702685] PKS_AT KR_2_FAS_SDR_x PP-binding CzcO PRK12316 A_NRPS_TlmIV_like PP-binding PksD KOG1202 PP-binding Thioesterase PksD PS-DH KOG1202 PksD RVT-GII PinE Feature: gene Location: 557414-558226 bp Ori: VED61934.1 Feature: domain Description: PHA02517 Location: 557429-558221 bp Feature: domain Description: PHA0251 7 Location: 557429-558221 bp Feature: gene Location: 558274-558561 bp Ori: VED61935.1 Feature: domain Description: InsE Location: 558283-558556 bp Feature: domain Description: InsE Location: 558283-558556 bp Feature: gene Location: 559787-560626 bp Ori: VED61936.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559793-560171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559793-5601 71 bp Feature: domain Description: GIIM Note: maturase Location: 560231-560462 bp Feature: domain Description: GIIM Note: maturase Location: 560231 -560462 bp Feature: gene Location: 560765-562423 bp Ori: VED61937.1 Feature: domain Description: M20_ArgE_RocB Location: 560834-562385 bp Feature: domain Description: M20_ArgE_RocB Location: 560834-562385 bp Feature: gene Location: 562574-562930 bp Ori: VED61938.1 Feature: domain Description: DUF3139 Location: 562583-562814 bp Feature: domain Description: DUF31 39 Location: 562583-56281 4 bp Feature: gene Location: 981273-982463 bp Ori: VED62343.1 Feature: domain Description: MFS_MefA_like Location: 981288-982428 bp Feature: domain Description: MFS_MefA_like Location: 981 288-982428 bp Feature: gene Location: 982477-983850 bp Ori: VED62344.1 Gene: yheS_3 Feature: domain Description: Uup Location: 982480-982660 bp Feature: domain Description: Uup Location: 982480-982660 bp Feature: domain Description: Uup Location: 982711-983827 bp Feature: domain Description: Uup Location: 98271 1 -983827 bp Feature: gene Location: 984430-984969 bp Ori: VED62345.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984646-984835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984646-984835 bp Feature: gene Location: 985567-986430 bp Ori: VED62346.1 Feature: domain Description: YdiL Location: 985636-986248 bp Feature: domain Description: YdiL Location: 985636-986248 bp Feature: gene Location: 986932-987474 bp Ori: VED62347.1 Feature: domain Description: DUF3267 Location: 987103-987406 bp Feature: domain Description: DUF3267 Location: 9871 03-987406 bp Feature: gene Location: 2106968-2107198 bp Ori: VED63405.1 Feature: domain Description: Ntox35 Location: 2107046-2107178 bp Feature: domain Description: Ntox35 Location: 21 07046-21 071 78 bp Feature: gene Location: 2107822-2108589 bp Ori: VED63406.1 Feature: domain Description: YdiL Location: 2107837-2108413 bp Feature: domain Description: YdiL Location: 21 07837-21 0841 3 bp Feature: gene Location: 2110143-2111048 bp Ori: VED63407.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2110368-2110980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 0368-21 1 0980 bp Feature: gene Location: 2111566-2112321 bp Feature: gene Location: 2112323-2113204 bp Ori: VED63409.1 Gene: metN_3 Feature: domain Description: CcmA Location: 2112329-2113145 bp Feature: domain Description: CcmA Location: 21 1 2329-21 1 31 45 bp Feature: gene Location: 2682843-2687240 bp Ori: VED63932.1 Gene: fabD_2 Feature: domain Description: PKS_AT Location: 2682891-2683734 bp Feature: domain Description: PKS_AT Location: 2682891 -2683734 bp Feature: domain Description: KR_2_FAS_SDR_x Location: 2684385-2685081 bp Feature: domain Description: KR_2_FAS_SDR_x Location: 2684385-2685081 bp Feature: domain Description: PP-binding Location: 2685180-2685366 bp Feature: domain Description: PP-binding Location: 26851 80-2685366 bp Feature: domain Description: CzcO Location: 2685432-2686071 bp Feature: domain Description: CzcO Location: 2685432-2686071 bp Feature: gene Location: 2687257-2699445 bp Ori: VED63933.1 Gene: pksN Feature: domain Description: PRK12316 Location: 2687608-2688751 bp Feature: domain Description: PRK1 231 6 Location: 2687608-2688751 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 2688883-2690314 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 2688883-269031 4 bp Feature: domain Description: PP-binding Location: 2690395-2690587 bp Feature: domain Description: PP-binding Location: 2690395-2690587 bp Feature: domain Description: PksD Location: 2690647-2691949 bp Feature: domain Description: PksD Location: 2690647-2691 949 bp Feature: domain Description: KOG1202 Location: 2692567-2693128 bp Feature: domain Description: KOG1 202 Location: 2692567-26931 28 bp Feature: domain Description: PP-binding Location: 2693392-2693590 bp Feature: domain Description: PP-binding Location: 2693392-2693590 bp Feature: domain Description: Thioesterase Location: 2693680-2693968 bp Feature: domain Description: Thioesterase Location: 2693680-2693968 bp Feature: domain Description: PksD Location: 2694289-2695585 bp Feature: domain Description: PksD Location: 2694289-2695585 bp Feature: domain Description: PS-DH Location: 2695717-2696434 bp Feature: domain Description: PS-DH Location: 269571 7-2696434 bp Feature: domain Description: KOG1202 Location: 2697028-2698117 bp Feature: domain Description: KOG1 202 Location: 2697028-26981 1 7 bp Feature: domain Description: PksD Location: 2698159-2699440 bp Feature: domain Description: PksD Location: 26981 59-2699440 bp Feature: gene Location: 2699754-2700272 bp Ori: VED63934.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699760-2699934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2699760-2699934 bp Feature: gene Location: 2701017-2701256 bp Feature: gene Location: 2702131-2702685 bp Ori: VED63936.1 Gene: hin Feature: domain Description: PinE Location: 2702134-2702680 bp Feature: domain Description: PinE Location: 27021 34-2702680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388), M20_ArgE_RocB (cd05654), DUF3139 (pfam11337), MFS_MefA_like (cd06173), Uup (COG0488), YdiL (COG1266), DUF3267 (pfam11667)
Ntox35 (pfam15534), CcmA (COG4133), PKS_AT (smart00827), KR_2_FAS_SDR_x (cd08955), PP-binding (pfam00550), CzcO (COG2072), PRK12316 (peptide synthase; Provisional), A_NRPS_TlmIV_like (cd12114), PksD (COG3321), KOG1202 (KOG1202, Animal-type fatty acid synthase and related proteins )
Thioesterase (pfam00975), PS-DH (pfam14765), PinE (COG1961)