myRT

myRT report for GCA_900636375.1_41594_B01

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Seq: LR134265.1 Streptococcus agalactiae strain NCTC8184 genome assembly, chromosome: 1 (2265974 bp)
Overview 1 RT 1: 333108-338658 bp 2 RT 2: 1086003-1096131 bp 3 RT 3: 1195667-1201504 bp 4 RT 4: 1345490-1351530 bp 5 RT 5: 1512788-1519679 bp Neighborhood of RT #1 [333108, 338675] rrmA ksgA RVT-Retrons 5S_RNA_mat_M5 TatD Neighborhood of RT #2 [1086003, 1096131] N6_Mtase COG4646 KOG0390 RVT_N RVT-GII GIIM Neighborhood of RT #3 [1195667, 1201521] COG3293 HTH_Tnp_4 RVT-GII RVT-GII group_II_RT_mat Relaxase ParB_N_like_MT YhdJ Neighborhood of RT #4 [1345490, 1351532] Cof PRK10416 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #5 [1512788, 1519684] PRK11856 lipoamide_DH lipoyltrans RVT-GII GIIM COG3442 MurE Feature: gene Location: 333108-333959 bp Ori: VED64369.1 Gene: rlmA Feature: domain Description: rrmA Location: 333156-333879 bp Feature: domain Description: rrmA Location: 3331 56-333879 bp Feature: gene Location: 333963-334835 bp Ori: VED64370.1 Gene: rsmA Feature: domain Description: ksgA Location: 333987-334824 bp Feature: domain Description: ksgA Location: 333987-334824 bp Feature: gene Location: 335096-337081 bp Ori: VED64371.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 335252-335888 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 335252-335888 bp Feature: gene Location: 337340-337906 bp Ori: VED64372.1 Feature: domain Description: 5S_RNA_mat_M5 Location: 337358-337883 bp Feature: domain Description: 5S_RNA_mat_M5 Location: 337358-337883 bp Feature: gene Location: 337893-338675 bp Ori: VED64373.1 Gene: ycfH Feature: domain Description: TatD Location: 337902-338658 bp Feature: domain Description: TatD Location: 337902-338658 bp Feature: gene Location: 1086003-1086554 bp Feature: gene Location: 1086605-1092601 bp Ori: VED65093.1 Feature: domain Description: N6_Mtase Location: 1088615-1089206 bp Feature: domain Description: N6_Mtase Location: 1 08861 5-1 089206 bp Feature: domain Description: COG4646 Location: 1089797-1092104 bp Feature: domain Description: COG4646 Location: 1 089797-1 0921 04 bp Feature: domain Description: KOG0390 Location: 1092371-1092572 bp Feature: domain Description: KOG0390 Location: 1 092371 -1 092572 bp Feature: gene Location: 1093161-1094819 bp Ori: VED65094.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 1093206-1093449 bp Feature: domain Description: RVT_N Location: 1 093206-1 093449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093494-1094142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 093494-1 0941 42 bp Feature: domain Description: GIIM Note: maturase Location: 1094199-1094427 bp Feature: domain Description: GIIM Note: maturase Location: 1 0941 99-1 094427 bp Feature: gene Location: 1094953-1095762 bp Feature: gene Location: 1095832-1096131 bp Feature: gene Location: 1195667-1196056 bp Ori: VED65201.1 Feature: domain Description: COG3293 Location: 1195670-1196042 bp Feature: domain Description: COG3293 Location: 1 1 95670-1 1 96042 bp Feature: gene Location: 1196089-1196472 bp Ori: VED65202.1 Feature: domain Description: HTH_Tnp_4 Location: 1196230-1196380 bp Feature: domain Description: HTH_Tnp_4 Location: 1 1 96230-1 1 96380 bp Feature: gene Location: 1197169-1197987 bp Ori: VED65203.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1197445-1197871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 97445-1 1 97871 bp Feature: gene Location: 1198034-1198972 bp Ori: VED65204.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1198058-1198250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 98058-1 1 98250 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1198457-1198589 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 1 98457-1 1 98589 bp Feature: gene Location: 1199297-1200277 bp Ori: VED65205.1 Feature: domain Description: Relaxase Location: 1199303-1199456 bp Feature: domain Description: Relaxase Location: 1 1 99303-1 1 99456 bp Feature: gene Location: 1200274-1201521 bp Ori: VED65206.1 Gene: yhdJ_1 Feature: domain Description: ParB_N_like_MT Location: 1200301-1200556 bp Feature: domain Description: ParB_N_like_MT Location: 1 200301 -1 200556 bp Feature: domain Description: YhdJ Location: 1200718-1201504 bp Feature: domain Description: YhdJ Location: 1 20071 8-1 201 504 bp Feature: gene Location: 1345490-1346314 bp Ori: VED65353.1 Gene: yidA Feature: domain Description: Cof Location: 1345502-1346300 bp Feature: domain Description: Cof Location: 1 345502-1 346300 bp Feature: gene Location: 1346314-1347924 bp Ori: VED65354.1 Gene: ftsY Feature: domain Description: PRK10416 Location: 1346599-1347913 bp Feature: domain Description: PRK1 041 6 Location: 1 346599-1 34791 3 bp Feature: gene Location: 1348475-1349752 bp Ori: VED65355.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1348679-1349294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 348679-1 349294 bp Feature: domain Description: GIIM Note: maturase Location: 1349348-1349564 bp Feature: domain Description: GIIM Note: maturase Location: 1 349348-1 349564 bp Feature: gene Location: 1349818-1350630 bp Ori: VED65356.1 Feature: domain Description: YcgQ Location: 1349821-1350628 bp Feature: domain Description: YcgQ Location: 1 349821 -1 350628 bp Feature: gene Location: 1350630-1351532 bp Ori: VED65357.1 Feature: domain Description: YraQ Location: 1350633-1351530 bp Feature: domain Description: YraQ Location: 1 350633-1 351 530 bp Feature: gene Location: 1512788-1514545 bp Ori: VED65504.1 Feature: domain Description: PRK11856 Location: 1512791-1513139 bp Feature: domain Description: PRK1 1 856 Location: 1 51 2791 -1 51 31 39 bp Feature: domain Description: lipoamide_DH Location: 1513166-1514525 bp Feature: domain Description: lipoamide_DH Location: 1 51 31 66-1 51 4525 bp Feature: gene Location: 1514643-1515632 bp Ori: VED65505.1 Gene: lplJ_1 Feature: domain Description: lipoyltrans Location: 1514658-1515606 bp Feature: domain Description: lipoyltrans Location: 1 51 4658-1 51 5606 bp Feature: gene Location: 1516213-1517490 bp Ori: VED65506.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1516417-1517032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 641 7-1 51 7032 bp Feature: domain Description: GIIM Note: maturase Location: 1517086-1517302 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 7086-1 51 7302 bp Feature: gene Location: 1517556-1518341 bp Ori: VED65507.1 Feature: domain Description: COG3442 Location: 1517604-1518330 bp Feature: domain Description: COG3442 Location: 1 51 7604-1 51 8330 bp Feature: gene Location: 1518341-1519684 bp Ori: VED65508.1 Feature: domain Description: MurE Location: 1518374-1519679 bp Feature: domain Description: MurE Location: 1 51 8374-1 51 9679 bp 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Associated domains:myRT rrmA (PRK11088), ksgA (TIGR00755), RVT-Retrons, 5S_RNA_mat_M5 (TIGR00334), TatD (COG0084), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII
GIIM (pfam08388), COG3293 (Transposase ), HTH_Tnp_4 (pfam13613), group_II_RT_mat (TIGR04416), Relaxase (pfam03432), ParB_N_like_MT (cd16844), YhdJ (COG0863), Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), YcgQ (COG3689)
YraQ (COG0701), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), lipoyltrans (TIGR00545), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769)