myRT

myRT report for GCA_900636405.1_41767_E01

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Seq: LR134270.1 Escherichia coli strain NCTC8196 genome assembly, chromosome: 1 (4857140 bp)
Overview 1 RT 1: 2650118-2655987 bp 2 RT 2: 2863676-2870209 bp Neighborhood of RT #1 [2650118, 2655989] ribA aconitase_1 RVT-GII GIIM YmiA Neighborhood of RT #2 [2863676, 2870343] PRK04155 RfaF RVT-Retrons ABC_ATPase ABC_ATPase Phage_int_SAM_2 Integrase_1 Feature: gene Location: 2650118-2650708 bp Ori: VED78900.1 Gene: ribA Feature: domain Description: ribA Location: 2650130-2650700 bp Feature: domain Description: ribA Location: 26501 30-2650700 bp Feature: gene Location: 2650772-2653447 bp Ori: VED78903.1 Gene: acnA Feature: domain Description: aconitase_1 Location: 2650826-2653442 bp Feature: domain Description: aconitase_1 Location: 2650826-2653442 bp Feature: gene Location: 2653739-2655028 bp Ori: VED78906.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2654060-2654678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2654060-2654678 bp Feature: domain Description: GIIM Note: maturase Location: 2654726-2654945 bp Feature: domain Description: GIIM Note: maturase Location: 2654726-2654945 bp Feature: gene Location: 2655688-2655858 bp Feature: gene Location: 2655861-2655989 bp Ori: VED78912.1 Gene: yciX_1 Feature: domain Description: YmiA Location: 2655864-2655987 bp Feature: domain Description: YmiA Location: 2655864-2655987 bp Feature: gene Location: 2863676-2864527 bp Ori: VED79300.1 Gene: hchA Feature: domain Description: PRK04155 Location: 2863682-2864519 bp Feature: domain Description: PRK041 55 Location: 2863682-286451 9 bp Feature: gene Location: 2864832-2865890 bp Ori: VED79302.1 Feature: domain Description: RfaF Location: 2864985-2865843 bp Feature: domain Description: RfaF Location: 2864985-2865843 bp Feature: gene Location: 2866721-2867692 bp Ori: VED79304.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2866853-2867420 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2866853-2867420 bp Feature: gene Location: 2867689-2869017 bp Ori: VED79306.1 Feature: domain Description: ABC_ATPase Location: 2867743-2867836 bp Feature: domain Description: ABC_ATPase Location: 2867743-2867836 bp Feature: domain Description: ABC_ATPase Location: 2868232-2868427 bp Feature: domain Description: ABC_ATPase Location: 2868232-2868427 bp Feature: gene Location: 2869459-2870343 bp Ori: VED79308.1 Feature: domain Description: Phage_int_SAM_2 Location: 2869462-2869732 bp Feature: domain Description: Phage_int_SAM_2 Location: 2869462-2869732 bp Feature: domain Description: Integrase_1 Location: 2869765-2870209 bp Feature: domain Description: Integrase_1 Location: 2869765-2870209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribA (TIGR00505), aconitase_1 (TIGR01341), RVT-GII, GIIM (pfam08388), YmiA (NF000536), PRK04155 (protein deglycase HchA), RfaF (COG0859), RVT-Retrons, ABC_ATPase (pfam09818), Phage_int_SAM_2 (pfam12834)
Integrase_1 (pfam12835)