myRT

myRT report for GCA_900636575.1_42912_C01

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Seq: LR134293.1 Streptococcus canis strain NCTC12191 genome assembly, chromosome: 1 (2084744 bp)
Overview 1 RT 1: 1340136-1347495 bp 2 RT 2: 1620371-1650279 bp Neighborhood of RT #1 [1340136, 1347515] PrgI TraC-F-type RVT_N RVT-GII GIIM HNH PHA02517 Neighborhood of RT #2 [1620371, 1650362] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 isopep_sspB_C2 isopep_sspB_C2 AgI_II_C2 LPXTG_anchor HNHc RVT-GII strep_RK_lipo Adhesin_P1_N GbpC GbpC AgI_II_C2 isopep_sspB_C2 COG5340 Cas9 RVT-GII Peptidase_M23 Phage_lysozyme2 PRK08581 RVT_N RVT-GII GIIM HNH TraC-F-type PrgI Feature: gene Location: 1340136-1340525 bp Ori: VEE25149.1 Feature: domain Description: PrgI Location: 1340154-1340421 bp Feature: domain Description: PrgI Location: 1 3401 54-1 340421 bp Feature: gene Location: 1340473-1341987 bp Ori: VEE25150.1 Feature: domain Description: TraC-F-type Location: 1340944-1341952 bp Feature: domain Description: TraC-F-type Location: 1 340944-1 341 952 bp Feature: gene Location: 1342518-1344191 bp Ori: VEE25151.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 1342590-1342830 bp Feature: domain Description: RVT_N Location: 1 342590-1 342830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342878-1343538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 342878-1 343538 bp Feature: domain Description: GIIM Note: maturase Location: 1343607-1343826 bp Feature: domain Description: GIIM Note: maturase Location: 1 343607-1 343826 bp Feature: domain Description: HNH Note: nucleases Location: 1344039-1344156 bp Feature: domain Description: HNH Note: nucleases Location: 1 344039-1 3441 56 bp Feature: gene Location: 1345160-1346725 bp Feature: gene Location: 1346736-1347515 bp Ori: VEE25153.1 Feature: domain Description: PHA02517 Location: 1346796-1347495 bp Feature: domain Description: PHA0251 7 Location: 1 346796-1 347495 bp Feature: gene Location: 1620371-1621180 bp Feature: gene Location: 1621314-1621655 bp Feature: gene Location: 1621752-1622972 bp Ori: VEE25431.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 1621797-1622040 bp Feature: domain Description: RVT_N Location: 1 621 797-1 622040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1622085-1622733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 622085-1 622733 bp Feature: domain Description: GIIM Note: maturase Location: 1622790-1622967 bp Feature: domain Description: GIIM Note: maturase Location: 1 622790-1 622967 bp Feature: gene Location: 1623532-1629543 bp Ori: VEE25432.1 Feature: domain Description: N6_Mtase Location: 1625560-1626148 bp Feature: domain Description: N6_Mtase Location: 1 625560-1 6261 48 bp Feature: domain Description: COG4646 Location: 1626742-1629046 bp Feature: domain Description: COG4646 Location: 1 626742-1 629046 bp Feature: domain Description: KOG0390 Location: 1629313-1629514 bp Feature: domain Description: KOG0390 Location: 1 62931 3-1 62951 4 bp Feature: gene Location: 1629594-1630145 bp Feature: gene Location: 1630321-1632066 bp Ori: VEE25435.1 Gene: ssp5_1 Feature: domain Description: isopep_sspB_C2 Location: 1630351-1630870 bp Feature: domain Description: isopep_sspB_C2 Location: 1 630351 -1 630870 bp Feature: domain Description: isopep_sspB_C2 Location: 1630882-1631401 bp Feature: domain Description: isopep_sspB_C2 Location: 1 630882-1 631 401 bp Feature: domain Description: AgI_II_C2 Location: 1631419-1631869 bp Feature: domain Description: AgI_II_C2 Location: 1 631 41 9-1 631 869 bp Feature: domain Description: LPXTG_anchor Location: 1631968-1632055 bp Feature: domain Description: LPXTG_anchor Location: 1 631 968-1 632055 bp Feature: gene Location: 1632215-1632700 bp Ori: VEE25436.1 Feature: domain Description: HNHc Note: nucleases Location: 1632455-1632590 bp Feature: domain Description: HNHc Note: nucleases Location: 1 632455-1 632590 bp Feature: gene Location: 1632896-1634011 bp Ori: VEE25437.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1633193-1633889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6331 93-1 633889 bp Feature: gene Location: 1634690-1637851 bp Ori: VEE25438.1 Gene: ssp5_2 Feature: domain Description: strep_RK_lipo Location: 1634747-1634852 bp Feature: domain Description: strep_RK_lipo Location: 1 634747-1 634852 bp Feature: domain Description: Adhesin_P1_N Location: 1635002-1635191 bp Feature: domain Description: Adhesin_P1 _N Location: 1 635002-1 6351 91 bp Feature: domain Description: GbpC Location: 1635800-1635992 bp Feature: domain Description: GbpC Location: 1 635800-1 635992 bp Feature: domain Description: GbpC Location: 1635992-1636580 bp Feature: domain Description: GbpC Location: 1 635992-1 636580 bp Feature: domain Description: AgI_II_C2 Location: 1636883-1637285 bp Feature: domain Description: AgI_II_C2 Location: 1 636883-1 637285 bp Feature: domain Description: isopep_sspB_C2 Location: 1637339-1637828 bp Feature: domain Description: isopep_sspB_C2 Location: 1 637339-1 637828 bp Feature: gene Location: 1638115-1638246 bp Feature: gene Location: 1639092-1639685 bp Ori: VEE25441.1 Feature: domain Description: COG5340 Location: 1639128-1639596 bp Feature: domain Description: COG5340 Location: 1 6391 28-1 639596 bp Feature: gene Location: 1640069-1640824 bp Ori: VEE25442.1 Feature: domain Description: Cas9 Location: 1640432-1640669 bp Feature: domain Description: Cas9 Location: 1 640432-1 640669 bp Feature: gene Location: 1640828-1641982 bp Ori: VEE25443.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1641155-1641890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 641 1 55-1 641 890 bp Feature: gene Location: 1642691-1645384 bp Ori: VEE25444.1 Feature: domain Description: Peptidase_M23 Location: 1644134-1644347 bp Feature: domain Description: Peptidase_M23 Location: 1 6441 34-1 644347 bp Feature: domain Description: Phage_lysozyme2 Location: 1644488-1644998 bp Feature: domain Description: Phage_lysozyme2 Location: 1 644488-1 644998 bp Feature: domain Description: PRK08581 Location: 1645118-1645367 bp Feature: domain Description: PRK08581 Location: 1 6451 1 8-1 645367 bp Feature: gene Location: 1646353-1648026 bp Ori: VEE25445.1 Gene: ltrA_5 Feature: domain Description: RVT_N Location: 1646425-1646665 bp Feature: domain Description: RVT_N Location: 1 646425-1 646665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1646713-1647373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 64671 3-1 647373 bp Feature: domain Description: GIIM Note: maturase Location: 1647442-1647661 bp Feature: domain Description: GIIM Note: maturase Location: 1 647442-1 647661 bp Feature: domain Description: HNH Note: nucleases Location: 1647874-1647991 bp Feature: domain Description: HNH Note: nucleases Location: 1 647874-1 647991 bp Feature: gene Location: 1648562-1650052 bp Ori: VEE25446.1 Feature: domain Description: TraC-F-type Location: 1649051-1649744 bp Feature: domain Description: TraC-F-type Location: 1 649051 -1 649744 bp Feature: gene Location: 1650009-1650362 bp Ori: VEE25447.1 Feature: domain Description: PrgI Location: 1650021-1650279 bp Feature: domain Description: PrgI Location: 1 650021 -1 650279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PHA02517 (putative transposase OrfB; Reviewed), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family )
isopep_sspB_C2 (TIGR04228), AgI_II_C2 (pfam17998), LPXTG_anchor (TIGR01167), HNHc (smart00507), strep_RK_lipo (TIGR03726), Adhesin_P1_N (pfam18652), GbpC (pfam08363), COG5340 (Transcriptional regulator, predicted component of viral defense system ), Cas9 (COG3513), Peptidase_M23 (pfam01551)
Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein)