myRT

myRT report for GCA_900636645.1_43295_H02

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Seq: LR134299.1 Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1 (6134366 bp)
Overview 1 RT 1: 33959-42963 bp 2 RT 2: 734245-739760 bp 3 RT 3: 1420238-1427775 bp 4 RT 4: 1614760-1620991 bp 5 RT 5: 2252644-2259310 bp 6 RT 6: 3009375-3014401 bp 7 RT 7: 4532362-4539000 bp 8 RT 8: 4781097-4788549 bp Neighborhood of RT #1 [33959, 43001] P-type_ATPase_HM_ZosA_PfeT-like DUF2790 RVT-GII GIIM 2A0601 8a0102 Neighborhood of RT #2 [734245, 739760] PulF N_methyl Pilin RVT-GII GIIM CSP_CDS Neighborhood of RT #3 [1420238, 1427843] DUF4223 RVT-GII GIIM PRK05257 RVT-GII GIIM HTH_20 OYE_YqiM_FMN Neighborhood of RT #4 [1614760, 1620999] YjgR YjgR RVT-GII PHA02517 InsE Neighborhood of RT #5 [2252644, 2259318] CytC galU RVT-GII GIIM PRK06116 PBP2_phosphate_like_1 OmpA_C-like Neighborhood of RT #6 [3009375, 3014427] PRK10605 RVT-GII GIIM oxido_grp_1 LysR Neighborhood of RT #7 [4532362, 4539008] TonB-siderophor RVT-GII GIIM PRK06213 KOG2848 Neighborhood of RT #8 [4781097, 4788560] mutS1 PreA DUF3470 RVT-GII GIIM PRK05657 nlpD EnvC Feature: gene Location: 33959-35956 bp Ori: VEE38390.1 Gene: cadA_1 Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 34049-35936 bp Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 34049-35936 bp Feature: gene Location: 36159-36482 bp Ori: VEE38392.1 Feature: domain Description: DUF2790 Location: 36270-36468 bp Feature: domain Description: DUF2790 Location: 36270-36468 bp Feature: gene Location: 36667-38088 bp Ori: VEE38394.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37024-37639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37024-37639 bp Feature: domain Description: GIIM Note: maturase Location: 37693-37921 bp Feature: domain Description: GIIM Note: maturase Location: 37693-37921 bp Feature: gene Location: 38565-41726 bp Ori: VEE38396.1 Gene: czcA_1 Feature: domain Description: 2A0601 Location: 38568-41709 bp Feature: domain Description: 2A0601 Location: 38568-41 709 bp Feature: gene Location: 41751-43001 bp Ori: VEE38398.1 Gene: czcB_1 Feature: domain Description: 8a0102 Location: 42159-42963 bp Feature: domain Description: 8a01 02 Location: 421 59-42963 bp Feature: gene Location: 734245-735453 bp Ori: VEE39345.1 Gene: epsF Feature: domain Description: PulF Location: 734266-735451 bp Feature: domain Description: PulF Location: 734266-735451 bp Feature: gene Location: 735670-736080 bp Ori: VEE39346.1 Gene: pilA Feature: domain Description: N_methyl Location: 735673-735751 bp Feature: domain Description: N_methyl Location: 735673-735751 bp Feature: domain Description: Pilin Location: 735775-736072 bp Feature: domain Description: Pilin Location: 735775-736072 bp Feature: gene Location: 736727-738148 bp Ori: VEE39347.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 737084-737699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 737084-737699 bp Feature: domain Description: GIIM Note: maturase Location: 737753-737981 bp Feature: domain Description: GIIM Note: maturase Location: 737753-737981 bp Feature: gene Location: 738422-739162 bp Ori: VEE39348.1 Feature: domain Description: CSP_CDS Location: 738461-738635 bp Feature: domain Description: CSP_CDS Location: 738461 -738635 bp Feature: gene Location: 739485-739760 bp Feature: gene Location: 1420238-1420429 bp Ori: VEE39962.1 Feature: domain Description: DUF4223 Location: 1420241-1420409 bp Feature: domain Description: DUF4223 Location: 1 420241 -1 420409 bp Feature: gene Location: 1420483-1420617 bp Feature: gene Location: 1420934-1422355 bp Ori: VEE39964.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1421291-1421906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 421 291 -1 421 906 bp Feature: domain Description: GIIM Note: maturase Location: 1421960-1422188 bp Feature: domain Description: GIIM Note: maturase Location: 1 421 960-1 4221 88 bp Feature: gene Location: 1422677-1424314 bp Ori: VEE39965.1 Gene: mqo-2 Feature: domain Description: PRK05257 Location: 1422752-1424222 bp Feature: domain Description: PRK05257 Location: 1 422752-1 424222 bp Feature: gene Location: 1424959-1426215 bp Ori: VEE39966.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1425151-1425766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4251 51 -1 425766 bp Feature: domain Description: GIIM Note: maturase Location: 1425820-1426048 bp Feature: domain Description: GIIM Note: maturase Location: 1 425820-1 426048 bp Feature: gene Location: 1426367-1426666 bp Ori: VEE39967.1 Feature: domain Description: HTH_20 Location: 1426415-1426583 bp Feature: domain Description: HTH_20 Location: 1 42641 5-1 426583 bp Feature: gene Location: 1426752-1427843 bp Ori: VEE39968.1 Gene: xenA Feature: domain Description: OYE_YqiM_FMN Location: 1426764-1427775 bp Feature: domain Description: OYE_YqiM_FMN Location: 1 426764-1 427775 bp Feature: gene Location: 1614760-1616523 bp Ori: VEE40148.1 Feature: domain Description: YjgR Location: 1615117-1615327 bp Feature: domain Description: YjgR Location: 1 61 51 1 7-1 61 5327 bp Feature: domain Description: YjgR Location: 1615792-1616437 bp Feature: domain Description: YjgR Location: 1 61 5792-1 61 6437 bp Feature: gene Location: 1616520-1617770 bp Feature: gene Location: 1619248-1620072 bp Ori: VEE40150.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1619254-1619680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 9254-1 61 9680 bp Feature: gene Location: 1619996-1620754 bp Ori: VEE40151.1 Feature: domain Description: PHA02517 Location: 1620068-1620614 bp Feature: domain Description: PHA0251 7 Location: 1 620068-1 62061 4 bp Feature: gene Location: 1620745-1620999 bp Ori: VEE40152.1 Feature: domain Description: InsE Location: 1620760-1620991 bp Feature: domain Description: InsE Location: 1 620760-1 620991 bp Feature: gene Location: 2252644-2253558 bp Ori: VEE40704.1 Feature: domain Description: CytC Location: 2252707-2253544 bp Feature: domain Description: CytC Location: 2252707-2253544 bp Feature: gene Location: 2253795-2254634 bp Ori: VEE40705.1 Gene: gtaB Feature: domain Description: galU Location: 2253804-2254587 bp Feature: domain Description: galU Location: 2253804-2254587 bp Feature: gene Location: 2255108-2256529 bp Ori: VEE40706.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2255465-2256080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2255465-2256080 bp Feature: domain Description: GIIM Note: maturase Location: 2256134-2256362 bp Feature: domain Description: GIIM Note: maturase Location: 22561 34-2256362 bp Feature: gene Location: 2256652-2258007 bp Ori: VEE40707.1 Gene: gor Feature: domain Description: PRK06116 Location: 2256655-2257993 bp Feature: domain Description: PRK061 1 6 Location: 2256655-2257993 bp Feature: gene Location: 2258011-2259318 bp Ori: VEE40708.1 Gene: sphX_1 Feature: domain Description: PBP2_phosphate_like_1 Location: 2258080-2258902 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 2258080-2258902 bp Feature: domain Description: OmpA_C-like Location: 2259001-2259310 bp Feature: domain Description: OmpA_C-like Location: 2259001 -225931 0 bp Feature: gene Location: 3009375-3010472 bp Ori: VEE41368.1 Gene: nemA_1 Feature: domain Description: PRK10605 Location: 3009381-3010461 bp Feature: domain Description: PRK1 0605 Location: 3009381 -301 0461 bp Feature: gene Location: 3010472-3010621 bp Feature: gene Location: 3010938-3012359 bp Ori: VEE41370.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3011295-3011910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 1 295-301 1 91 0 bp Feature: domain Description: GIIM Note: maturase Location: 3011964-3012192 bp Feature: domain Description: GIIM Note: maturase Location: 301 1 964-301 21 92 bp Feature: gene Location: 3012435-3013415 bp Ori: VEE41371.1 Gene: limB_2 Feature: domain Description: oxido_grp_1 Location: 3012447-3013398 bp Feature: domain Description: oxido_grp_1 Location: 301 2447-301 3398 bp Feature: gene Location: 3013516-3014427 bp Ori: VEE41372.1 Gene: dmlR_9 Feature: domain Description: LysR Location: 3013540-3014401 bp Feature: domain Description: LysR Location: 301 3540-301 4401 bp Feature: gene Location: 4532362-4532742 bp Feature: gene Location: 4532943-4535075 bp Ori: VEE42754.1 Gene: fcuA_4 Feature: domain Description: TonB-siderophor Location: 4533132-4535073 bp Feature: domain Description: TonB-siderophor Location: 45331 32-4535073 bp Feature: gene Location: 4535302-4536723 bp Ori: VEE42755.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4535659-4536274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4535659-4536274 bp Feature: domain Description: GIIM Note: maturase Location: 4536328-4536556 bp Feature: domain Description: GIIM Note: maturase Location: 4536328-4536556 bp Feature: gene Location: 4537485-4538174 bp Ori: VEE42756.1 Gene: fadJ Feature: domain Description: PRK06213 Location: 4537488-4538169 bp Feature: domain Description: PRK0621 3 Location: 4537488-45381 69 bp Feature: gene Location: 4538295-4539008 bp Ori: VEE42757.1 Gene: plsC_2 Feature: domain Description: KOG2848 Location: 4538313-4539000 bp Feature: domain Description: KOG2848 Location: 453831 3-4539000 bp Feature: gene Location: 4781097-4783670 bp Ori: VEE42975.1 Gene: mutS Feature: domain Description: mutS1 Location: 4781118-4783659 bp Feature: domain Description: mutS1 Location: 4781 1 1 8-4783659 bp Feature: gene Location: 4783811-4784134 bp Ori: VEE42976.1 Gene: fdxA Feature: domain Description: PreA Location: 4783823-4783997 bp Feature: domain Description: PreA Location: 4783823-4783997 bp Feature: domain Description: DUF3470 Location: 4784009-4784132 bp Feature: domain Description: DUF3470 Location: 4784009-47841 32 bp Feature: gene Location: 4784691-4786112 bp Ori: VEE42977.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4785048-4785663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4785048-4785663 bp Feature: domain Description: GIIM Note: maturase Location: 4785717-4785945 bp Feature: domain Description: GIIM Note: maturase Location: 478571 7-4785945 bp Feature: gene Location: 4786587-4787594 bp Ori: VEE42978.1 Gene: rpoS Feature: domain Description: PRK05657 Location: 4786647-4787589 bp Feature: domain Description: PRK05657 Location: 4786647-4787589 bp Feature: gene Location: 4787703-4788560 bp Ori: VEE42979.1 Gene: nlpD Feature: domain Description: nlpD Location: 4787826-4788054 bp Feature: domain Description: nlpD Location: 4787826-4788054 bp Feature: domain Description: EnvC Location: 4788153-4788549 bp Feature: domain Description: EnvC Location: 47881 53-4788549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_HM_ZosA_PfeT-like (cd07551), DUF2790 (pfam10976), RVT-GII, GIIM (pfam08388), 2A0601 (TIGR00914), 8a0102 (TIGR00999), PulF (COG1459), N_methyl (pfam07963), Pilin (pfam00114), CSP_CDS (cd04458)
DUF4223 (pfam13978), PRK05257 (malate:quinone oxidoreductase; Validated), HTH_20 (pfam12840), OYE_YqiM_FMN (cd02932), YjgR (COG0433), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), CytC (COG3258), galU (TIGR01099), PRK06116 (glutathione reductase; Validated)
PBP2_phosphate_like_1 (cd13653), OmpA_C-like (cl30079), PRK10605 (N-ethylmaleimide reductase; Provisional), oxido_grp_1 (TIGR03558), LysR (COG0583), TonB-siderophor (TIGR01783), PRK06213 (crotonase/enoyl-CoA hydratase family protein), KOG2848 (KOG2848, 1-acyl-sn-glycerol-3-phosphate acyltransferase ), mutS1 (TIGR01070), PreA (COG1146)
DUF3470 (pfam11953), PRK05657 (RNA polymerase sigma factor RpoS; Validated), nlpD (PRK10871), EnvC (COG4942)