myRT

myRT report for GCA_900636665.1_43781_G01

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Seq: LR134303.1 Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1 (5049396 bp)
Overview 1 RT 1: 564833-576013 bp 2 RT 2: 1413873-1424086 bp 3 RT 3: 4650457-4657950 bp Neighborhood of RT #1 [564833, 576018] Peptidase_S41_IRBP Peptidase_S41_IRBP PRK13746 RVT-GII GIIM RVT-GII GIIM DAP2 DAP2 DAP2 PRK08997 Neighborhood of RT #2 [1413873, 1424364] groES groEL RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII GIIM HNHc STKc_PknB_like Neighborhood of RT #3 [4650457, 4658018] YeeA RVT-UG5 YeeA Feature: gene Location: 564833-566092 bp Ori: VEE60792.1 Feature: domain Description: Peptidase_S41_IRBP Location: 565295-565715 bp Feature: domain Description: Peptidase_S41 _IRBP Location: 565295-56571 5 bp Feature: domain Description: Peptidase_S41_IRBP Location: 565727-565994 bp Feature: domain Description: Peptidase_S41 _IRBP Location: 565727-565994 bp Feature: gene Location: 566122-566901 bp Ori: VEE60793.1 Gene: ant1 Feature: domain Description: PRK13746 Location: 566128-566893 bp Feature: domain Description: PRK1 3746 Location: 5661 28-566893 bp Feature: gene Location: 566990-568339 bp Ori: VEE60794.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567272-567890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567272-567890 bp Feature: domain Description: GIIM Note: maturase Location: 567938-568142 bp Feature: domain Description: GIIM Note: maturase Location: 567938-5681 42 bp Feature: gene Location: 568924-569274 bp Feature: gene Location: 569369-570718 bp Ori: VEE60796.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569651-570269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569651 -570269 bp Feature: domain Description: GIIM Note: maturase Location: 570317-570521 bp Feature: domain Description: GIIM Note: maturase Location: 57031 7-570521 bp Feature: gene Location: 571937-574753 bp Ori: VEE60797.1 Feature: domain Description: DAP2 Location: 572528-573005 bp Feature: domain Description: DAP2 Location: 572528-573005 bp Feature: domain Description: DAP2 Location: 573044-573335 bp Feature: domain Description: DAP2 Location: 573044-573335 bp Feature: domain Description: DAP2 Location: 573725-574688 bp Feature: domain Description: DAP2 Location: 573725-574688 bp Feature: gene Location: 575008-576018 bp Ori: VEE60798.1 Gene: icd_1 Feature: domain Description: PRK08997 Location: 575017-576013 bp Feature: domain Description: PRK08997 Location: 57501 7-57601 3 bp Feature: gene Location: 1413873-1414163 bp Ori: VEE61521.1 Gene: groS Feature: domain Description: groES Location: 1413876-1414158 bp Feature: domain Description: groES Location: 1 41 3876-1 41 41 58 bp Feature: gene Location: 1414221-1415858 bp Ori: VEE61522.1 Gene: groL Feature: domain Description: groEL Location: 1414227-1415844 bp Feature: domain Description: groEL Location: 1 41 4227-1 41 5844 bp Feature: gene Location: 1417018-1418694 bp Ori: VEE61523.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 1417069-1417309 bp Feature: domain Description: RVT_N Location: 1 41 7069-1 41 7309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417357-1418002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 7357-1 41 8002 bp Feature: domain Description: GIIM Note: maturase Location: 1418056-1418287 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 8056-1 41 8287 bp Feature: domain Description: HNHc Note: nucleases Location: 1418500-1418659 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 8500-1 41 8659 bp Feature: gene Location: 1418726-1419019 bp Feature: gene Location: 1420303-1421979 bp Ori: VEE61525.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 1420354-1420594 bp Feature: domain Description: RVT_N Location: 1 420354-1 420594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1420642-1421287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 420642-1 421 287 bp Feature: domain Description: GIIM Note: maturase Location: 1421341-1421572 bp Feature: domain Description: GIIM Note: maturase Location: 1 421 341 -1 421 572 bp Feature: domain Description: HNHc Note: nucleases Location: 1421785-1421944 bp Feature: domain Description: HNHc Note: nucleases Location: 1 421 785-1 421 944 bp Feature: gene Location: 1422011-1422304 bp Feature: gene Location: 1423330-1424364 bp Ori: VEE61527.1 Feature: domain Description: STKc_PknB_like Location: 1423639-1424086 bp Feature: domain Description: STKc_PknB_like Location: 1 423639-1 424086 bp Feature: gene Location: 4650457-4652400 bp Ori: VEE64277.1 Feature: domain Description: YeeA Location: 4651096-4652356 bp Feature: domain Description: YeeA Location: 4651 096-4652356 bp Feature: gene Location: 4652403-4652567 bp Feature: gene Location: 4652564-4655602 bp Ori: VEE64279.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4653062-4653542 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4653062-4653542 bp Feature: gene Location: 4655605-4656291 bp Feature: gene Location: 4656288-4658018 bp Ori: VEE64281.1 Feature: domain Description: YeeA Location: 4657023-4657950 bp Feature: domain Description: YeeA Location: 4657023-4657950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S41_IRBP (cd07563), PRK13746 (aminoglycoside resistance protein; Provisional), RVT-GII, GIIM (pfam08388), DAP2 (COG1506), PRK08997 (isocitrate dehydrogenase; Provisional), groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), HNHc (smart00507)
STKc_PknB_like (cd14014), YeeA (COG1002), RVT-UG5