myRT

myRT report for GCA_900636705.1_43908_A02

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Seq: LR134306.1 Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1 (4938759 bp)
Overview 1 RT 1: 3474937-3481472 bp 2 RT 2: 3616858-3620480 bp 3 RT 3: 4602295-4605917 bp Neighborhood of RT #1 [3474937, 3481472] PRK13889 AAA_21 RVT-Retrons Neighborhood of RT #2 [3616858, 3620480] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-Retrons HTH_XRE Neighborhood of RT #3 [4602295, 4605917] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-Retrons HTH_XRE Feature: gene Location: 3474937-3476340 bp Ori: VEE72836.1 Gene: mobA_2 Feature: domain Description: PRK13889 Location: 3474940-3475522 bp Feature: domain Description: PRK1 3889 Location: 3474940-3475522 bp Feature: gene Location: 3476560-3478677 bp Ori: VEE72837.1 Feature: domain Description: AAA_21 Location: 3476635-3477544 bp Feature: domain Description: AAA_21 Location: 3476635-3477544 bp Feature: gene Location: 3478844-3479947 bp Ori: VEE72838.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3478991-3479546 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3478991 -3479546 bp Feature: gene Location: 3480322-3480876 bp Feature: gene Location: 3480891-3481472 bp Feature: gene Location: 3616858-3617799 bp Ori: VEE72957.1 Gene: xerC_4 Feature: domain Description: INT_RitB_C_like Location: 3617173-3617773 bp Feature: domain Description: INT_RitB_C_like Location: 361 71 73-361 7773 bp Feature: gene Location: 3617796-3618794 bp Ori: VEE72958.1 Gene: xerD_3 Feature: domain Description: Phage_int_SAM_1 Location: 3617841-3618096 bp Feature: domain Description: Phage_int_SAM_1 Location: 361 7841 -361 8096 bp Feature: domain Description: INT_RitC_C_like Location: 3618177-3618717 bp Feature: domain Description: INT_RitC_C_like Location: 361 81 77-361 871 7 bp Feature: gene Location: 3618947-3619915 bp Ori: VEE72959.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3619100-3619661 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 361 91 00-361 9661 bp Feature: gene Location: 3619884-3620186 bp Ori: VEE72960.1 Gene: sinR_1 Feature: domain Description: HTH_XRE Location: 3619896-3620061 bp Feature: domain Description: HTH_XRE Location: 361 9896-3620061 bp Feature: gene Location: 3620241-3620480 bp Feature: gene Location: 4602295-4603236 bp Ori: VEE73813.1 Gene: xerC_5 Feature: domain Description: INT_RitB_C_like Location: 4602610-4603210 bp Feature: domain Description: INT_RitB_C_like Location: 460261 0-460321 0 bp Feature: gene Location: 4603233-4604231 bp Ori: VEE73814.1 Gene: xerD_6 Feature: domain Description: Phage_int_SAM_1 Location: 4603278-4603533 bp Feature: domain Description: Phage_int_SAM_1 Location: 4603278-4603533 bp Feature: domain Description: INT_RitC_C_like Location: 4603614-4604154 bp Feature: domain Description: INT_RitC_C_like Location: 460361 4-46041 54 bp Feature: gene Location: 4604384-4605352 bp Ori: VEE73815.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4604537-4605098 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4604537-4605098 bp Feature: gene Location: 4605321-4605623 bp Ori: VEE73816.1 Gene: sinR_2 Feature: domain Description: HTH_XRE Location: 4605333-4605498 bp Feature: domain Description: HTH_XRE Location: 4605333-4605498 bp Feature: gene Location: 4605678-4605917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), AAA_21 (pfam13304), RVT-Retrons, INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), HTH_XRE (smart00530)