myRT

myRT report for GCA_900636855.1_44858_H01

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Seq: LR134321.1 Shewanella putrefaciens strain NCTC10737 genome assembly, chromosome: 1 (4999751 bp)
Overview 1 RT 1: 906835-913204 bp 2 RT 2: 1971859-1976149 bp 3 RT 3: 2545088-2549647 bp 4 RT 4: 4548694-4552934 bp Neighborhood of RT #1 [906835, 913224] PHA02517 InsE RVT-UG17 PRK11904 Neighborhood of RT #2 [1971859, 1976247] HEPN_AbiU2 Pentapeptide Pentapeptide RVT-GII GIIM DDE_Tnp_IS1595 Neighborhood of RT #3 [2545088, 2549647] DUF998 RVT-GII GIIM HicB Neighborhood of RT #4 [4548694, 4552934] COG3547 RVT-Retrons Feature: gene Location: 906835-907647 bp Ori: VEF24775.1 Feature: domain Description: PHA02517 Location: 906838-907624 bp Feature: domain Description: PHA0251 7 Location: 906838-907624 bp Feature: gene Location: 907701-908012 bp Ori: VEF24776.1 Feature: domain Description: InsE Location: 907716-908001 bp Feature: domain Description: InsE Location: 90771 6-908001 bp Feature: gene Location: 908279-909328 bp Ori: VEF24777.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 908282-908825 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 908282-908825 bp Feature: gene Location: 909895-910074 bp Feature: gene Location: 910045-913224 bp Ori: VEF24779.1 Gene: putA Feature: domain Description: PRK11904 Location: 910078-913204 bp Feature: domain Description: PRK1 1 904 Location: 91 0078-91 3204 bp Feature: gene Location: 1971859-1972578 bp Ori: VEF25660.1 Feature: domain Description: HEPN_AbiU2 Location: 1971910-1972567 bp Feature: domain Description: HEPN_AbiU2 Location: 1 971 91 0-1 972567 bp Feature: gene Location: 1972700-1973167 bp Ori: VEF25661.1 Gene: spkB Feature: domain Description: Pentapeptide Location: 1972793-1972904 bp Feature: domain Description: Pentapeptide Location: 1 972793-1 972904 bp Feature: domain Description: Pentapeptide Location: 1972907-1973018 bp Feature: domain Description: Pentapeptide Location: 1 972907-1 97301 8 bp Feature: gene Location: 1973477-1974769 bp Ori: VEF25662.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973702-1974320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 973702-1 974320 bp Feature: domain Description: GIIM Note: maturase Location: 1974368-1974572 bp Feature: domain Description: GIIM Note: maturase Location: 1 974368-1 974572 bp Feature: gene Location: 1974851-1975159 bp Feature: gene Location: 1975549-1976247 bp Ori: VEF25664.1 Feature: domain Description: DDE_Tnp_IS1595 Location: 1975708-1976149 bp Feature: domain Description: DDE_Tnp_IS1 595 Location: 1 975708-1 9761 49 bp Feature: gene Location: 2545088-2545693 bp Ori: VEF26131.1 Feature: domain Description: DUF998 Location: 2545121-2545682 bp Feature: domain Description: DUF998 Location: 25451 21 -2545682 bp Feature: gene Location: 2545849-2546532 bp Feature: gene Location: 2546624-2547439 bp Ori: VEF26133.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2546627-2546990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2546627-2546990 bp Feature: domain Description: GIIM Note: maturase Location: 2547038-2547242 bp Feature: domain Description: GIIM Note: maturase Location: 2547038-2547242 bp Feature: gene Location: 2548316-2548648 bp Ori: VEF26134.1 Feature: domain Description: HicB Location: 2548319-2548643 bp Feature: domain Description: HicB Location: 254831 9-2548643 bp Feature: gene Location: 2549219-2549647 bp Feature: gene Location: 4548694-4548798 bp Feature: gene Location: 4549041-4550054 bp Ori: VEF27803.1 Feature: domain Description: COG3547 Location: 4549053-4550022 bp Feature: domain Description: COG3547 Location: 4549053-4550022 bp Feature: gene Location: 4550629-4552386 bp Ori: VEF27804.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4550764-4551385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4550764-4551 385 bp Feature: gene Location: 4552487-4552615 bp Feature: gene Location: 4552674-4552934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-UG17, PRK11904 (bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA), HEPN_AbiU2 (pfam18734), Pentapeptide (pfam00805), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS1595 (pfam12762), DUF998 (pfam06197)
HicB (pfam05534), COG3547 (Transposase ), RVT-Retrons