myRT

myRT report for GCA_900636945.1_45532_G01

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Seq: LR134328.1 Bacillus freudenreichii strain NCTC4823 genome assembly, chromosome: 1 (4368765 bp)
Overview 1 RT 1: 504096-510313 bp 2 RT 2: 731366-738985 bp 3 RT 3: 797764-804121 bp 4 RT 4: 1467872-1475386 bp 5 RT 5: 1887909-1892301 bp 6 RT 6: 2205923-2214515 bp 7 RT 7: 2377333-2385192 bp 8 RT 8: 2855597-2862511 bp 9 RT 9: 3563232-3569667 bp 10 RT 10: 3658450-3663716 bp 11 RT 11: 3718045-3721661 bp 12 RT 12: 4192497-4197812 bp Neighborhood of RT #1 [504096, 510330] MurA spore_II_D RVT-GII NlpD spore_III_D Neighborhood of RT #2 [731366, 739809] RVT-Retrons McrB DUF2357 PDDEXK_7 Neighborhood of RT #3 [797764, 804141] PLN02805 TauD RVT-GII GIIM RidA spore_YtaF Neighborhood of RT #4 [1467872, 1475415] pheS pheT RVT-GII GIIM caa3_CtaG caa3_CtaG NRDE Neighborhood of RT #5 [1887909, 1892301] PHA02517 HTH_28 HTH_28 RVT-GII GIIM YqfW Neighborhood of RT #6 [2205923, 2214535] parE_Gpos parC_Gpos RVT-GII GIIM argC PRK00942 Neighborhood of RT #7 [2377333, 2386571] PRK00215 spore_II_P RVT-GII GIIM katE M14-like Neighborhood of RT #8 [2855597, 2862516] AmyAc_bac_CMD_like_2 AmyAc_bac_CMD_like_2 Malt_amylase_C PRK10060 RVT-GII GIIM PRK13673 MhpD Neighborhood of RT #9 [3563232, 3569672] PHA02517 Zn_pept RVT-GII GIIM CoA_transf_3 YuxK Neighborhood of RT #10 [3658450, 3663721] IlvA LysR RVT-GII GIIM groEL groES Neighborhood of RT #11 [3718045, 3721780] YgaA RVT-GII GIIM CsbD HTH_YyaN Neighborhood of RT #12 [4192497, 4197838] YtcJ RVT-GII GIIM IPP_isom_2 ERG9 Feature: gene Location: 504096-505406 bp Ori: VEF46483.1 Gene: murAA Feature: domain Description: MurA Location: 504102-505347 bp Feature: domain Description: MurA Location: 5041 02-505347 bp Feature: gene Location: 505593-506615 bp Ori: VEF46484.1 Feature: domain Description: spore_II_D Location: 505614-506574 bp Feature: domain Description: spore_II_D Location: 50561 4-506574 bp Feature: gene Location: 507210-508142 bp Ori: VEF46485.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507408-508026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507408-508026 bp Feature: gene Location: 508817-509674 bp Ori: VEF46486.1 Gene: spoIIQ Feature: domain Description: NlpD Location: 509153-509471 bp Feature: domain Description: NlpD Location: 5091 53-509471 bp Feature: gene Location: 510070-510330 bp Ori: VEF46487.1 Gene: spoIIID Feature: domain Description: spore_III_D Location: 510076-510313 bp Feature: domain Description: spore_III_D Location: 51 0076-51 031 3 bp Feature: gene Location: 731366-732082 bp Feature: gene Location: 732337-733419 bp Feature: gene Location: 733419-734369 bp Ori: VEF46691.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 733458-734052 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 733458-734052 bp Feature: gene Location: 735067-737337 bp Ori: VEF46692.1 Feature: domain Description: McrB Location: 736312-737056 bp Feature: domain Description: McrB Location: 73631 2-737056 bp Feature: gene Location: 737353-739809 bp Ori: VEF46693.1 Feature: domain Description: DUF2357 Location: 737719-738478 bp Feature: domain Description: DUF2357 Location: 73771 9-738478 bp Feature: domain Description: PDDEXK_7 Location: 738547-738985 bp Feature: domain Description: PDDEXK_7 Location: 738547-738985 bp Feature: gene Location: 797764-799146 bp Ori: VEF46748.1 Feature: domain Description: PLN02805 Location: 797824-799126 bp Feature: domain Description: PLN02805 Location: 797824-7991 26 bp Feature: gene Location: 799289-800281 bp Ori: VEF46749.1 Feature: domain Description: TauD Location: 799448-800195 bp Feature: domain Description: TauD Location: 799448-8001 95 bp Feature: gene Location: 800881-802143 bp Ori: VEF46750.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801079-801697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801 079-801 697 bp Feature: domain Description: GIIM Note: maturase Location: 801745-801955 bp Feature: domain Description: GIIM Note: maturase Location: 801 745-801 955 bp Feature: gene Location: 802307-802711 bp Ori: VEF46751.1 Gene: yjgH Feature: domain Description: RidA Location: 802337-802703 bp Feature: domain Description: RidA Location: 802337-802703 bp Feature: gene Location: 803524-804141 bp Ori: VEF46752.1 Feature: domain Description: spore_YtaF Location: 803542-804121 bp Feature: domain Description: spore_YtaF Location: 803542-8041 21 bp Feature: gene Location: 1467872-1468909 bp Ori: VEF47371.1 Gene: pheS Feature: domain Description: pheS Location: 1467878-1468895 bp Feature: domain Description: pheS Location: 1 467878-1 468895 bp Feature: gene Location: 1468927-1471341 bp Ori: VEF47372.1 Gene: pheT_2 Feature: domain Description: pheT Location: 1468930-1471339 bp Feature: domain Description: pheT Location: 1 468930-1 471 339 bp Feature: gene Location: 1472293-1473555 bp Ori: VEF47373.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1472491-1473109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 472491 -1 4731 09 bp Feature: domain Description: GIIM Note: maturase Location: 1473157-1473367 bp Feature: domain Description: GIIM Note: maturase Location: 1 4731 57-1 473367 bp Feature: gene Location: 1473754-1474611 bp Ori: VEF47374.1 Gene: ctaG_1 Feature: domain Description: caa3_CtaG Location: 1473775-1474396 bp Feature: domain Description: caa3_CtaG Location: 1 473775-1 474396 bp Feature: domain Description: caa3_CtaG Location: 1474411-1474534 bp Feature: domain Description: caa3_CtaG Location: 1 47441 1 -1 474534 bp Feature: gene Location: 1474651-1475415 bp Ori: VEF47375.1 Feature: domain Description: NRDE Location: 1474654-1475386 bp Feature: domain Description: NRDE Location: 1 474654-1 475386 bp Feature: gene Location: 1887909-1888718 bp Ori: VEF47783.1 Feature: domain Description: PHA02517 Location: 1887930-1888686 bp Feature: domain Description: PHA0251 7 Location: 1 887930-1 888686 bp Feature: gene Location: 1888736-1889302 bp Ori: VEF47784.1 Feature: domain Description: HTH_28 Location: 1888760-1888907 bp Feature: domain Description: HTH_28 Location: 1 888760-1 888907 bp Feature: domain Description: HTH_28 Location: 1888934-1889090 bp Feature: domain Description: HTH_28 Location: 1 888934-1 889090 bp Feature: gene Location: 1889929-1891191 bp Ori: VEF47785.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1890127-1890745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8901 27-1 890745 bp Feature: domain Description: GIIM Note: maturase Location: 1890793-1891003 bp Feature: domain Description: GIIM Note: maturase Location: 1 890793-1 891 003 bp Feature: gene Location: 1891247-1891834 bp Ori: VEF47786.1 Feature: domain Description: YqfW Location: 1891253-1891811 bp Feature: domain Description: YqfW Location: 1 891 253-1 891 81 1 bp Feature: gene Location: 1891978-1892301 bp Feature: gene Location: 2205923-2207902 bp Ori: VEF48108.1 Gene: parE Feature: domain Description: parE_Gpos Location: 2205950-2207855 bp Feature: domain Description: parE_Gpos Location: 2205950-2207855 bp Feature: gene Location: 2207899-2210331 bp Ori: VEF48109.1 Gene: parC Feature: domain Description: parC_Gpos Location: 2207923-2210137 bp Feature: domain Description: parC_Gpos Location: 2207923-221 01 37 bp Feature: gene Location: 2210405-2211667 bp Ori: VEF48110.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2210603-2211221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 0603-221 1 221 bp Feature: domain Description: GIIM Note: maturase Location: 2211269-2211479 bp Feature: domain Description: GIIM Note: maturase Location: 221 1 269-221 1 479 bp Feature: gene Location: 2212701-2213735 bp Ori: VEF48111.1 Gene: argC Feature: domain Description: argC Location: 2212707-2213733 bp Feature: domain Description: argC Location: 221 2707-221 3733 bp Feature: gene Location: 2213756-2214535 bp Ori: VEF48112.1 Gene: argB Feature: domain Description: PRK00942 Location: 2213762-2214515 bp Feature: domain Description: PRK00942 Location: 221 3762-221 451 5 bp Feature: gene Location: 2377333-2377962 bp Ori: VEF48274.1 Gene: lexA Feature: domain Description: PRK00215 Location: 2377342-2377951 bp Feature: domain Description: PRK0021 5 Location: 2377342-2377951 bp Feature: gene Location: 2378025-2379113 bp Ori: VEF48275.1 Gene: spoIIP Feature: domain Description: spore_II_P Location: 2378478-2379087 bp Feature: domain Description: spore_II_P Location: 2378478-2379087 bp Feature: gene Location: 2379803-2381065 bp Ori: VEF48276.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2380001-2380619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2380001 -238061 9 bp Feature: domain Description: GIIM Note: maturase Location: 2380667-2380877 bp Feature: domain Description: GIIM Note: maturase Location: 2380667-2380877 bp Feature: gene Location: 2381660-2383708 bp Ori: VEF48277.1 Gene: katE_1 Feature: domain Description: katE Location: 2381672-2383700 bp Feature: domain Description: katE Location: 2381 672-2383700 bp Feature: gene Location: 2384160-2386571 bp Ori: VEF48278.1 Feature: domain Description: M14-like Location: 2384559-2385192 bp Feature: domain Description: M1 4-like Location: 2384559-23851 92 bp Feature: gene Location: 2855597-2857126 bp Ori: VEF48715.1 Feature: domain Description: AmyAc_bac_CMD_like_2 Location: 2855699-2856089 bp Feature: domain Description: AmyAc_bac_CMD_like_2 Location: 2855699-2856089 bp Feature: domain Description: AmyAc_bac_CMD_like_2 Location: 2856101-2856695 bp Feature: domain Description: AmyAc_bac_CMD_like_2 Location: 28561 01 -2856695 bp Feature: domain Description: Malt_amylase_C Location: 2856764-2856887 bp Feature: domain Description: Malt_amylase_C Location: 2856764-2856887 bp Feature: gene Location: 2857192-2858874 bp Ori: VEF48716.1 Gene: gmr_3 Feature: domain Description: PRK10060 Location: 2857240-2858863 bp Feature: domain Description: PRK1 0060 Location: 2857240-2858863 bp Feature: gene Location: 2859295-2860557 bp Ori: VEF48717.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2859493-2860111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2859493-28601 1 1 bp Feature: domain Description: GIIM Note: maturase Location: 2860159-2860369 bp Feature: domain Description: GIIM Note: maturase Location: 28601 59-2860369 bp Feature: gene Location: 2861156-2861527 bp Ori: VEF48718.1 Feature: domain Description: PRK13673 Location: 2861171-2861519 bp Feature: domain Description: PRK1 3673 Location: 2861 1 71 -2861 51 9 bp Feature: gene Location: 2861620-2862516 bp Ori: VEF48719.1 Gene: yisK Feature: domain Description: MhpD Location: 2861812-2862511 bp Feature: domain Description: MhpD Location: 2861 81 2-286251 1 bp Feature: gene Location: 3563232-3564056 bp Ori: VEF49342.1 Feature: domain Description: PHA02517 Location: 3563298-3564036 bp Feature: domain Description: PHA0251 7 Location: 3563298-3564036 bp Feature: gene Location: 3564137-3565552 bp Ori: VEF49343.1 Feature: domain Description: Zn_pept Location: 3564269-3564761 bp Feature: domain Description: Zn_pept Location: 3564269-3564761 bp Feature: gene Location: 3566045-3567307 bp Ori: VEF49344.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3566243-3566861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3566243-3566861 bp Feature: domain Description: GIIM Note: maturase Location: 3566909-3567122 bp Feature: domain Description: GIIM Note: maturase Location: 3566909-35671 22 bp Feature: gene Location: 3567981-3569195 bp Ori: VEF49345.1 Gene: frc_3 Feature: domain Description: CoA_transf_3 Location: 3568011-3569121 bp Feature: domain Description: CoA_transf_3 Location: 356801 1 -35691 21 bp Feature: gene Location: 3569280-3569672 bp Ori: VEF49346.1 Feature: domain Description: YuxK Location: 3569289-3569667 bp Feature: domain Description: YuxK Location: 3569289-3569667 bp Feature: gene Location: 3658450-3658674 bp Ori: VEF49427.1 Gene: ilvA_2 Feature: domain Description: IlvA Location: 3658462-3658609 bp Feature: domain Description: IlvA Location: 3658462-3658609 bp Feature: gene Location: 3658787-3659620 bp Ori: VEF49428.1 Gene: oxyR Feature: domain Description: LysR Location: 3658790-3659594 bp Feature: domain Description: LysR Location: 3658790-3659594 bp Feature: gene Location: 3659875-3661137 bp Ori: VEF49429.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3660073-3660691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3660073-3660691 bp Feature: domain Description: GIIM Note: maturase Location: 3660739-3660949 bp Feature: domain Description: GIIM Note: maturase Location: 3660739-3660949 bp Feature: gene Location: 3661753-3663381 bp Ori: VEF49430.1 Gene: groEL Feature: domain Description: groEL Location: 3661756-3663364 bp Feature: domain Description: groEL Location: 3661 756-3663364 bp Feature: gene Location: 3663437-3663721 bp Ori: VEF49431.1 Gene: groES Feature: domain Description: groES Location: 3663443-3663716 bp Feature: domain Description: groES Location: 3663443-366371 6 bp Feature: gene Location: 3718045-3718635 bp Ori: VEF49476.1 Gene: ybfM Feature: domain Description: YgaA Location: 3718075-3718513 bp Feature: domain Description: YgaA Location: 371 8075-371 851 3 bp Feature: gene Location: 3718744-3718896 bp Feature: gene Location: 3719130-3720392 bp Ori: VEF49478.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3719328-3719946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 9328-371 9946 bp Feature: domain Description: GIIM Note: maturase Location: 3719994-3720204 bp Feature: domain Description: GIIM Note: maturase Location: 371 9994-3720204 bp Feature: gene Location: 3720989-3721180 bp Ori: VEF49479.1 Gene: csbD Feature: domain Description: CsbD Location: 3721019-3721172 bp Feature: domain Description: CsbD Location: 3721 01 9-3721 1 72 bp Feature: gene Location: 3721265-3721780 bp Ori: VEF49480.1 Feature: domain Description: HTH_YyaN Location: 3721289-3721661 bp Feature: domain Description: HTH_YyaN Location: 3721 289-3721 661 bp Feature: gene Location: 4192497-4193222 bp Ori: VEF49889.1 Gene: nfdA_11 Feature: domain Description: YtcJ Location: 4192500-4193178 bp Feature: domain Description: YtcJ Location: 41 92500-41 931 78 bp Feature: gene Location: 4193666-4193836 bp Feature: gene Location: 4194011-4195273 bp Ori: VEF49891.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4194209-4194827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 94209-41 94827 bp Feature: domain Description: GIIM Note: maturase Location: 4194875-4195085 bp Feature: domain Description: GIIM Note: maturase Location: 41 94875-41 95085 bp Feature: gene Location: 4195886-4196914 bp Ori: VEF49892.1 Gene: fni Feature: domain Description: IPP_isom_2 Location: 4195907-4196906 bp Feature: domain Description: IPP_isom_2 Location: 41 95907-41 96906 bp Feature: gene Location: 4197026-4197838 bp Ori: VEF49893.1 Feature: domain Description: ERG9 Location: 4197047-4197812 bp Feature: domain Description: ERG9 Location: 41 97047-41 9781 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurA (COG0766), spore_II_D (TIGR02870), RVT-GII, NlpD (COG0739), spore_III_D (TIGR02844), RVT-Retrons, McrB (COG4054), DUF2357 (pfam09823), PDDEXK_7 (pfam04411), PLN02805 (D-lactate dehydrogenase )
TauD (pfam02668), GIIM (pfam08388), RidA (COG0251), spore_YtaF (TIGR02840), pheS (TIGR00468), pheT (PRK09616), caa3_CtaG (TIGR02737), NRDE (COG3332), PHA02517 (putative transposase OrfB; Reviewed), HTH_28 (pfam13518)
YqfW (COG5663), parE_Gpos (TIGR01058), parC_Gpos (TIGR01061), argC (TIGR01850), PRK00942 (acetylglutamate kinase; Provisional), PRK00215 (transcriptional repressor LexA), spore_II_P (TIGR02867), katE (PRK11249), M14-like (cd06905), AmyAc_bac_CMD_like_2 (cd11339)
Malt_amylase_C (pfam16657), PRK10060 (cyclic di-GMP phosphodiesterase), PRK13673 (hypothetical protein; Provisional), MhpD (COG3971), Zn_pept (smart00631), CoA_transf_3 (pfam02515), YuxK (COG3011), IlvA (COG1171), LysR (COG0583), groEL (PRK12852)
groES (PRK14533), YgaA (COG1238), CsbD (pfam05532), HTH_YyaN (cd01109), YtcJ (COG1574), IPP_isom_2 (TIGR02151), ERG9 (COG1562)