myRT

myRT report for GCA_900638145.1_56433_F01

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Seq: LR134492.1 Serratia fonticola strain NCTC13193 genome assembly, chromosome: 1 (5831056 bp)
Overview 1 RT 1: 106811-109623 bp 2 RT 2: 349500-354641 bp 3 RT 3: 551940-557463 bp 4 RT 4: 2200862-2204820 bp 5 RT 5: 2621315-2626808 bp 6 RT 6: 4072802-4077082 bp 7 RT 7: 5523620-5528328 bp 8 RT 8: 5636839-5641186 bp Neighborhood of RT #1 [106811, 109623] PRK15287 FimA RVT-UG4 Neighborhood of RT #2 [349500, 354670] PRK10425 ALAD_PBGS_aspartate_rich RVT-GII GIIM rfaH PRK05282 Neighborhood of RT #3 [551940, 557489] PRK11099 PRK11018 RVT-GII GIIM PRK10508 PRK03598 Neighborhood of RT #4 [2200862, 2204820] InsE RVT-GII GIIM Tra5 Neighborhood of RT #5 [2621315, 2626808] DUF2239 Arm-DNA-bind_3 INT_P4_C RVT-GII GIIM DUF4060 Neighborhood of RT #6 [4072802, 4077117] HTH_XRE YaiL RVT-GII GIIM GlgS FimC Neighborhood of RT #7 [5523620, 5528330] FieF FieF FieF RVT-UG4 FimA PRK15287 Neighborhood of RT #8 [5636839, 5641206] menA RraA_entero RVT-GII GIIM PRK15422 GlpF Feature: gene Location: 106811-107287 bp Ori: VEI61919.1 Feature: domain Description: PRK15287 Location: 106817-107285 bp Feature: domain Description: PRK1 5287 Location: 1 0681 7-1 07285 bp Feature: gene Location: 107287-107835 bp Ori: VEI61921.1 Gene: smfA_2 Feature: domain Description: FimA Location: 107335-107833 bp Feature: domain Description: FimA Location: 1 07335-1 07833 bp Feature: gene Location: 107828-108802 bp Ori: VEI61923.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 108173-108614 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 081 73-1 0861 4 bp Feature: gene Location: 108851-109330 bp Feature: gene Location: 109276-109623 bp Feature: gene Location: 349500-350357 bp Ori: VEI62442.1 Gene: tatD Feature: domain Description: PRK10425 Location: 349503-349941 bp Feature: domain Description: PRK1 0425 Location: 349503-349941 bp Feature: gene Location: 350296-351318 bp Ori: VEI62444.1 Gene: hemB Feature: domain Description: ALAD_PBGS_aspartate_rich Location: 350332-351298 bp Feature: domain Description: ALAD_PBGS_aspartate_rich Location: 350332-351 298 bp Feature: gene Location: 351776-353128 bp Ori: VEI62446.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352097-352715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352097-35271 5 bp Feature: domain Description: GIIM Note: maturase Location: 352763-352985 bp Feature: domain Description: GIIM Note: maturase Location: 352763-352985 bp Feature: gene Location: 353224-353712 bp Ori: VEI62448.1 Gene: rfaH Feature: domain Description: rfaH Location: 353227-353707 bp Feature: domain Description: rfaH Location: 353227-353707 bp Feature: gene Location: 353945-354670 bp Ori: VEI62450.1 Gene: pepE Feature: domain Description: PRK05282 Location: 353948-354641 bp Feature: domain Description: PRK05282 Location: 353948-354641 bp Feature: gene Location: 551940-553154 bp Ori: VEI62862.1 Gene: yedE Feature: domain Description: PRK11099 Location: 551955-553122 bp Feature: domain Description: PRK1 1 099 Location: 551 955-5531 22 bp Feature: gene Location: 553151-553390 bp Ori: VEI62865.1 Gene: yedF Feature: domain Description: PRK11018 Location: 553163-553388 bp Feature: domain Description: PRK1 1 01 8 Location: 5531 63-553388 bp Feature: gene Location: 553969-555192 bp Ori: VEI62868.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554161-554779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5541 61 -554779 bp Feature: domain Description: GIIM Note: maturase Location: 554827-555049 bp Feature: domain Description: GIIM Note: maturase Location: 554827-555049 bp Feature: gene Location: 555289-556302 bp Ori: VEI62871.1 Gene: limB Feature: domain Description: PRK10508 Location: 555301-556291 bp Feature: domain Description: PRK1 0508 Location: 555301 -556291 bp Feature: gene Location: 556518-557489 bp Ori: VEI62874.1 Feature: domain Description: PRK03598 Location: 556536-557463 bp Feature: domain Description: PRK03598 Location: 556536-557463 bp Feature: gene Location: 2200862-2201836 bp Feature: gene Location: 2201950-2202234 bp Ori: VEI68120.1 Feature: domain Description: InsE Location: 2201962-2202223 bp Feature: domain Description: InsE Location: 2201 962-2202223 bp Feature: gene Location: 2202450-2203973 bp Ori: VEI68122.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2202723-2203455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2202723-2203455 bp Feature: domain Description: GIIM Note: maturase Location: 2203530-2203728 bp Feature: domain Description: GIIM Note: maturase Location: 2203530-2203728 bp Feature: gene Location: 2204138-2204512 bp Ori: VEI68124.1 Feature: domain Description: Tra5 Location: 2204153-2204507 bp Feature: domain Description: Tra5 Location: 22041 53-2204507 bp Feature: gene Location: 2204674-2204820 bp Feature: gene Location: 2621315-2621893 bp Ori: VEI69365.1 Feature: domain Description: DUF2239 Location: 2621339-2621864 bp Feature: domain Description: DUF2239 Location: 2621 339-2621 864 bp Feature: gene Location: 2622338-2623531 bp Ori: VEI69368.1 Gene: intS_4 Feature: domain Description: Arm-DNA-bind_3 Location: 2622344-2622590 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2622344-2622590 bp Feature: domain Description: INT_P4_C Location: 2622959-2623499 bp Feature: domain Description: INT_P4_C Location: 2622959-2623499 bp Feature: gene Location: 2624181-2625404 bp Ori: VEI69371.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2624373-2624991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2624373-2624991 bp Feature: domain Description: GIIM Note: maturase Location: 2625039-2625261 bp Feature: domain Description: GIIM Note: maturase Location: 2625039-2625261 bp Feature: gene Location: 2625607-2625846 bp Ori: VEI69374.1 Feature: domain Description: DUF4060 Location: 2625619-2625826 bp Feature: domain Description: DUF4060 Location: 262561 9-2625826 bp Feature: gene Location: 2626569-2626808 bp Feature: gene Location: 4072802-4073152 bp Ori: VEI73425.1 Feature: domain Description: HTH_XRE Location: 4072991-4073147 bp Feature: domain Description: HTH_XRE Location: 4072991 -40731 47 bp Feature: gene Location: 4073386-4073925 bp Ori: VEI73427.1 Feature: domain Description: YaiL Location: 4073389-4073923 bp Feature: domain Description: YaiL Location: 4073389-4073923 bp Feature: gene Location: 4074144-4075496 bp Ori: VEI73429.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4074465-4075083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4074465-4075083 bp Feature: domain Description: GIIM Note: maturase Location: 4075131-4075353 bp Feature: domain Description: GIIM Note: maturase Location: 40751 31 -4075353 bp Feature: gene Location: 4075949-4076158 bp Ori: VEI73431.1 Feature: domain Description: GlgS Location: 4075994-4076129 bp Feature: domain Description: GlgS Location: 4075994-40761 29 bp Feature: gene Location: 4076317-4077117 bp Ori: VEI73433.1 Gene: fimC_8 Feature: domain Description: FimC Location: 4076368-4077082 bp Feature: domain Description: FimC Location: 4076368-4077082 bp Feature: gene Location: 5523620-5524984 bp Ori: VEI76997.1 Gene: fieF_1 Feature: domain Description: FieF Location: 5523629-5524469 bp Feature: domain Description: FieF Location: 5523629-5524469 bp Feature: domain Description: FieF Location: 5524481-5524706 bp Feature: domain Description: FieF Location: 5524481 -5524706 bp Feature: domain Description: FieF Location: 5524757-5524982 bp Feature: domain Description: FieF Location: 5524757-5524982 bp Feature: gene Location: 5525531-5526331 bp Feature: gene Location: 5526369-5527328 bp Ori: VEI77001.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5526711-5527152 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 552671 1 -55271 52 bp Feature: gene Location: 5527321-5527845 bp Ori: VEI77003.1 Gene: mrpA_10 Feature: domain Description: FimA Location: 5527345-5527843 bp Feature: domain Description: FimA Location: 5527345-5527843 bp Feature: gene Location: 5527842-5528330 bp Ori: VEI77005.1 Gene: prsF_6 Feature: domain Description: PRK15287 Location: 5527863-5528328 bp Feature: domain Description: PRK1 5287 Location: 5527863-5528328 bp Feature: gene Location: 5636839-5637756 bp Ori: VEI77216.1 Gene: menA Feature: domain Description: menA Location: 5636893-5637742 bp Feature: domain Description: menA Location: 5636893-5637742 bp Feature: gene Location: 5637861-5638346 bp Ori: VEI77218.1 Gene: rraA Feature: domain Description: RraA_entero Location: 5637864-5638344 bp Feature: domain Description: RraA_entero Location: 5637864-5638344 bp Feature: gene Location: 5638452-5639804 bp Ori: VEI77220.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5638773-5639391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5638773-5639391 bp Feature: domain Description: GIIM Note: maturase Location: 5639439-5639661 bp Feature: domain Description: GIIM Note: maturase Location: 5639439-5639661 bp Feature: gene Location: 5640266-5640505 bp Ori: VEI77222.1 Gene: zapB Feature: domain Description: PRK15422 Location: 5640269-5640503 bp Feature: domain Description: PRK1 5422 Location: 5640269-5640503 bp Feature: gene Location: 5641027-5641206 bp Ori: VEI77223.1 Gene: glpF_1 Feature: domain Description: GlpF Location: 5641060-5641186 bp Feature: domain Description: GlpF Location: 5641 060-5641 1 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15287 (fimbrial minor subunit StfF), FimA (pfam16970), RVT-UG4, PRK10425 (3'-5' ssDNA/RNA exonuclease TatD), ALAD_PBGS_aspartate_rich (cd04823), RVT-GII, GIIM (pfam08388), rfaH (PRK09014), PRK05282 (dipeptidase PepE), PRK11099 (putative inner membrane protein; Provisional)
PRK11018 (putative sulfurtransferase YedF), PRK10508 (luciferase-like monooxygenase), PRK03598 (putative efflux pump membrane fusion protein; Provisional), InsE (COG2963), Tra5 (COG2801), DUF2239 (pfam09998), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), DUF4060 (pfam13269), HTH_XRE (smart00530)
YaiL (COG3122), GlgS (pfam08971), FimC (COG3121), FieF (COG0053), menA (TIGR00751), RraA_entero (TIGR02998), PRK15422 (septal ring assembly protein ZapB; Provisional), GlpF (COG0580)