myRT

myRT report for GCA_900639465.1_E7429_hybrid_assembly

Download annotations/find similar RTs

Seq: LR135297.1 Enterococcus faecium isolate E7429 genome assembly, chromosome: 1 (2929158 bp)
Overview 1 RT 1: 1043085-1052560 bp 2 RT 2: 1183322-1189171 bp 3 RT 3: 1367206-1371598 bp 4 RT 4: 1870288-1875613 bp 5 RT 5: 2101693-2106999 bp 6 RT 6: 2772482-2783387 bp Neighborhood of RT #1 [1043085, 1052568] P-type_ATPase_Ca_prok P-type_ATPase_SERCA UbiE RVT-GII GIIM HMG-CoA-S_prok thiolase HMG-CoA_reductase_classII Neighborhood of RT #2 [1183322, 1189194] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Neighborhood of RT #3 [1367206, 1371598] doc_partner Doc RVT-GII GIIM ldh Neighborhood of RT #4 [1870288, 1875613] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #5 [2101693, 2106999] KOG3033 OCDMu RVT-GII GIIM ARO8 Neighborhood of RT #6 [2772482, 2783401] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 1043085-1045751 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1043172-1045329 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1 0431 72-1 045329 bp Feature: domain Description: P-type_ATPase_SERCA Location: 1045452-1045725 bp Feature: domain Description: P-type_ATPase_SERCA Location: 1 045452-1 045725 bp Feature: gene Location: 1046115-1046867 bp Feature: domain Description: UbiE Location: 1046217-1046442 bp Feature: domain Description: UbiE Location: 1 04621 7-1 046442 bp Feature: gene Location: 1047320-1048708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047641-1048256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 047641 -1 048256 bp Feature: domain Description: GIIM Note: maturase Location: 1048313-1048529 bp Feature: domain Description: GIIM Note: maturase Location: 1 04831 3-1 048529 bp Feature: gene Location: 1048788-1049942 bp Feature: domain Description: HMG-CoA-S_prok Location: 1048797-1049934 bp Feature: domain Description: HMG-CoA-S_prok Location: 1 048797-1 049934 bp Feature: gene Location: 1050118-1052568 bp Feature: domain Description: thiolase Location: 1050142-1051282 bp Feature: domain Description: thiolase Location: 1 0501 42-1 051 282 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 1051321-1052560 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 1 051 321 -1 052560 bp Feature: gene Location: 1183322-1184446 bp Feature: domain Description: PRK06019 Location: 1183346-1184435 bp Feature: domain Description: PRK0601 9 Location: 1 1 83346-1 1 84435 bp Feature: gene Location: 1184459-1185754 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1184471-1185740 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 1 84471 -1 1 85740 bp Feature: gene Location: 1185876-1187264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1186197-1186812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 861 97-1 1 8681 2 bp Feature: domain Description: GIIM Note: maturase Location: 1186869-1187085 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 86869-1 1 87085 bp Feature: gene Location: 1187833-1188210 bp Feature: gene Location: 1188466-1189194 bp Feature: domain Description: PRK09362 Location: 1188469-1189171 bp Feature: domain Description: PRK09362 Location: 1 1 88469-1 1 891 71 bp Feature: gene Location: 1367206-1367442 bp Feature: domain Description: doc_partner Location: 1367227-1367437 bp Feature: domain Description: doc_partner Location: 1 367227-1 367437 bp Feature: gene Location: 1367439-1367837 bp Feature: domain Description: Doc Location: 1367448-1367808 bp Feature: domain Description: Doc Location: 1 367448-1 367808 bp Feature: gene Location: 1368916-1370304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1369237-1369852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 369237-1 369852 bp Feature: domain Description: GIIM Note: maturase Location: 1369909-1370125 bp Feature: domain Description: GIIM Note: maturase Location: 1 369909-1 3701 25 bp Feature: gene Location: 1370403-1371347 bp Feature: domain Description: ldh Location: 1370406-1371342 bp Feature: domain Description: ldh Location: 1 370406-1 371 342 bp Feature: gene Location: 1371425-1371598 bp Feature: gene Location: 1870288-1870788 bp Feature: domain Description: ArdA Location: 1870306-1870777 bp Feature: domain Description: ArdA Location: 1 870306-1 870777 bp Feature: gene Location: 1870801-1870953 bp Feature: gene Location: 1871129-1873039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1871462-1872200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 871 462-1 872200 bp Feature: domain Description: HNHc Note: nucleases Location: 1872755-1872920 bp Feature: domain Description: HNHc Note: nucleases Location: 1 872755-1 872920 bp Feature: gene Location: 1873919-1875103 bp Feature: domain Description: HTH_XRE Location: 1873949-1874093 bp Feature: domain Description: HTH_XRE Location: 1 873949-1 874093 bp Feature: domain Description: Rol_Rep_N Location: 1874126-1874390 bp Feature: domain Description: Rol_Rep_N Location: 1 8741 26-1 874390 bp Feature: domain Description: Rep_trans Location: 1874414-1875026 bp Feature: domain Description: Rep_trans Location: 1 87441 4-1 875026 bp Feature: gene Location: 1875359-1875613 bp Feature: gene Location: 2101693-2102475 bp Feature: domain Description: KOG3033 Location: 2101705-2102464 bp Feature: domain Description: KOG3033 Location: 21 01 705-21 02464 bp Feature: gene Location: 2102472-2103443 bp Feature: domain Description: OCDMu Location: 2102475-2103429 bp Feature: domain Description: OCDMu Location: 21 02475-21 03429 bp Feature: gene Location: 2103564-2104952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103885-2104500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 03885-21 04500 bp Feature: domain Description: GIIM Note: maturase Location: 2104557-2104773 bp Feature: domain Description: GIIM Note: maturase Location: 21 04557-21 04773 bp Feature: gene Location: 2105434-2106828 bp Feature: domain Description: ARO8 Location: 2105500-2106817 bp Feature: domain Description: ARO8 Location: 21 05500-21 0681 7 bp Feature: gene Location: 2106859-2106999 bp Feature: gene Location: 2772482-2772826 bp Feature: domain Description: RelB_DinJ Location: 2772692-2772818 bp Feature: domain Description: RelB_DinJ Location: 2772692-277281 8 bp Feature: gene Location: 2772895-2773911 bp Feature: domain Description: FtsK_SpoIIIE Location: 2773552-2773792 bp Feature: domain Description: FtsK_SpoIIIE Location: 2773552-2773792 bp Feature: gene Location: 2774505-2776379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2774871-2775567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2774871 -2775567 bp Feature: domain Description: HNHc Note: nucleases Location: 2776107-2776266 bp Feature: domain Description: HNHc Note: nucleases Location: 27761 07-2776266 bp Feature: gene Location: 2776481-2776861 bp Feature: domain Description: FtsK Location: 2776496-2776736 bp Feature: domain Description: FtsK Location: 2776496-2776736 bp Feature: gene Location: 2776906-2778048 bp Feature: domain Description: Dcm Location: 2776909-2778022 bp Feature: domain Description: Dcm Location: 2776909-2778022 bp Feature: gene Location: 2778583-2779767 bp Feature: domain Description: HTH_XRE Location: 2778613-2778757 bp Feature: domain Description: HTH_XRE Location: 277861 3-2778757 bp Feature: domain Description: Rol_Rep_N Location: 2778790-2779054 bp Feature: domain Description: Rol_Rep_N Location: 2778790-2779054 bp Feature: domain Description: Rep_trans Location: 2779078-2779690 bp Feature: domain Description: Rep_trans Location: 2779078-2779690 bp Feature: gene Location: 2780647-2782557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2780980-2781718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2780980-2781 71 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2782273-2782438 bp Feature: domain Description: HNHc Note: nucleases Location: 2782273-2782438 bp Feature: gene Location: 2782745-2782885 bp Feature: gene Location: 2782898-2783401 bp Feature: domain Description: ArdA Location: 2782916-2783387 bp Feature: domain Description: ArdA Location: 278291 6-2783387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083), UbiE (COG2226), RVT-GII, GIIM (pfam08388), HMG-CoA-S_prok (TIGR01835), thiolase (PRK06158), HMG-CoA_reductase_classII (cd00644), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360)
PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), doc_partner (TIGR02609), Doc (COG3654), ldh (PRK00066), ArdA (pfam07275), HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), KOG3033 (KOG3033, Predicted PhzC/PhzF-type epimerase )
OCDMu (COG2423), ARO8 (COG1167), RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), FtsK (COG1674), Dcm (COG0270)