myRT

myRT report for GCA_900639485.1_E7240_hybrid_assembly

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Seq: LR135307.1 Enterococcus faecium isolate E7240 genome assembly, chromosome: 1 (2990636 bp)
Overview 1 RT 1: 51867-59466 bp 2 RT 2: 288089-302270 bp 3 RT 3: 1968190-1974800 bp 4 RT 4: 2860329-2873074 bp Neighborhood of RT #1 [51867, 59466] TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [288089, 302270] FtsK HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA AAA_10 RVT-GII AAA_10 Neighborhood of RT #3 [1968190, 1974871] Transposase_mut AAA_10 RVT-GII AAA_10 TcpE Neighborhood of RT #4 [2860329, 2873074] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Feature: gene Location: 51867-52325 bp Feature: domain Description: TcpE Location: 51948-52245 bp Feature: domain Description: TcpE Location: 51 948-52245 bp Feature: gene Location: 52309-53862 bp Feature: domain Description: AAA_10 Location: 53641-53827 bp Feature: domain Description: AAA_1 0 Location: 53641 -53827 bp Feature: gene Location: 54559-56385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54859-55558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54859-55558 bp Feature: gene Location: 56747-57442 bp Feature: domain Description: AAA_10 Location: 56753-57404 bp Feature: domain Description: AAA_1 0 Location: 56753-57404 bp Feature: gene Location: 57439-59466 bp Feature: gene Location: 288089-289474 bp Feature: domain Description: FtsK Location: 288698-289331 bp Feature: domain Description: FtsK Location: 288698-289331 bp Feature: gene Location: 289653-290858 bp Feature: domain Description: HTH_XRE Location: 289698-289842 bp Feature: domain Description: HTH_XRE Location: 289698-289842 bp Feature: domain Description: Rol_Rep_N Location: 289869-290136 bp Feature: domain Description: Rol_Rep_N Location: 289869-2901 36 bp Feature: domain Description: Rep_trans Location: 290160-290769 bp Feature: domain Description: Rep_trans Location: 2901 60-290769 bp Feature: gene Location: 291642-293552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291975-292713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 975-29271 3 bp Feature: domain Description: HNHc Note: nucleases Location: 293268-293433 bp Feature: domain Description: HNHc Note: nucleases Location: 293268-293433 bp Feature: gene Location: 293713-293880 bp Feature: gene Location: 293997-294494 bp Feature: domain Description: ArdA Location: 294015-294480 bp Feature: domain Description: ArdA Location: 29401 5-294480 bp Feature: gene Location: 294906-296510 bp Feature: domain Description: AAA_10 Location: 296289-296475 bp Feature: domain Description: AAA_1 0 Location: 296289-296475 bp Feature: gene Location: 297207-299033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297507-298206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297507-298206 bp Feature: gene Location: 299167-300084 bp Feature: domain Description: AAA_10 Location: 299173-300052 bp Feature: domain Description: AAA_1 0 Location: 2991 73-300052 bp Feature: gene Location: 300087-302270 bp Feature: gene Location: 1968190-1969377 bp Feature: domain Description: Transposase_mut Location: 1968193-1969336 bp Feature: domain Description: Transposase_mut Location: 1 9681 93-1 969336 bp Feature: gene Location: 1969470-1970288 bp Feature: domain Description: AAA_10 Location: 1969476-1970274 bp Feature: domain Description: AAA_1 0 Location: 1 969476-1 970274 bp Feature: gene Location: 1970422-1972206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1970680-1971379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 970680-1 971 379 bp Feature: gene Location: 1972945-1974495 bp Feature: domain Description: AAA_10 Location: 1974274-1974457 bp Feature: domain Description: AAA_1 0 Location: 1 974274-1 974457 bp Feature: gene Location: 1974482-1974871 bp Feature: domain Description: TcpE Location: 1974500-1974800 bp Feature: domain Description: TcpE Location: 1 974500-1 974800 bp Feature: gene Location: 2860329-2860472 bp Feature: gene Location: 2860565-2861749 bp Feature: domain Description: HTH_XRE Location: 2860595-2860739 bp Feature: domain Description: HTH_XRE Location: 2860595-2860739 bp Feature: domain Description: Rol_Rep_N Location: 2860772-2861036 bp Feature: domain Description: Rol_Rep_N Location: 2860772-2861 036 bp Feature: domain Description: Rep_trans Location: 2861060-2861672 bp Feature: domain Description: Rep_trans Location: 2861 060-2861 672 bp Feature: gene Location: 2862629-2864539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2862962-2863700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2862962-2863700 bp Feature: domain Description: HNHc Note: nucleases Location: 2864255-2864420 bp Feature: domain Description: HNHc Note: nucleases Location: 2864255-2864420 bp Feature: gene Location: 2864727-2864867 bp Feature: gene Location: 2864880-2865383 bp Feature: domain Description: ArdA Location: 2864898-2865369 bp Feature: domain Description: ArdA Location: 2864898-2865369 bp Feature: gene Location: 2865443-2865832 bp Feature: domain Description: TcpE Location: 2865461-2865761 bp Feature: domain Description: TcpE Location: 2865461 -2865761 bp Feature: gene Location: 2865819-2867369 bp Feature: domain Description: AAA_10 Location: 2867148-2867331 bp Feature: domain Description: AAA_1 0 Location: 28671 48-2867331 bp Feature: gene Location: 2868066-2869892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2868366-2869065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2868366-2869065 bp Feature: gene Location: 2870026-2870946 bp Feature: domain Description: AAA_10 Location: 2870032-2870911 bp Feature: domain Description: AAA_1 0 Location: 2870032-287091 1 bp Feature: gene Location: 2870951-2873074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), AAA_10 (pfam12846), RVT-GII, FtsK (COG1674), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), HNHc (smart00507), ArdA (pfam07275), Transposase_mut (pfam00872)

Seq: LR135310.1 Enterococcus faecium isolate E7240 genome assembly, plasmid: 4 (38828 bp)
Overview 1 RT 1: 21624-26272 bp Neighborhood of RT #1 [21624, 26301] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 21624-21785 bp Feature: gene Location: 21868-22821 bp Feature: domain Description: Tra8 Location: 21871-22798 bp Feature: domain Description: Tra8 Location: 2 1871-2 2 798 bp Feature: gene Location: 22799-24274 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23147-23612 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 3147-2 3612 bp Feature: gene Location: 24612-26090 bp Feature: domain Description: HsdM Location: 24633-26058 bp Feature: domain Description: HsdM Location: 2 4633-2 6058 bp Feature: gene Location: 26113-26301 bp Feature: domain Description: Rve Location: 26119-26272 bp Feature: domain Description: Rve Location: 2 6119-2 62 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)