myRT

myRT report for GCA_900639495.1_E7471_hybrid_assembly

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Seq: LR135331.1 Enterococcus faecium isolate E7471 genome assembly, chromosome: 1 (2882360 bp)
Overview 1 RT 1: 600485-611390 bp Neighborhood of RT #1 [600485, 611404] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 600485-600829 bp Feature: domain Description: RelB_DinJ Location: 600695-600821 bp Feature: domain Description: RelB_DinJ Location: 600695-600821 bp Feature: gene Location: 600898-601914 bp Feature: domain Description: FtsK_SpoIIIE Location: 601555-601795 bp Feature: domain Description: FtsK_SpoIIIE Location: 601 555-601 795 bp Feature: gene Location: 602508-604382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602874-603570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602874-603570 bp Feature: domain Description: HNHc Note: nucleases Location: 604110-604269 bp Feature: domain Description: HNHc Note: nucleases Location: 6041 1 0-604269 bp Feature: gene Location: 604484-604864 bp Feature: domain Description: FtsK Location: 604499-604739 bp Feature: domain Description: FtsK Location: 604499-604739 bp Feature: gene Location: 604909-606051 bp Feature: domain Description: Dcm Location: 604912-606025 bp Feature: domain Description: Dcm Location: 60491 2-606025 bp Feature: gene Location: 606586-607770 bp Feature: domain Description: HTH_XRE Location: 606616-606760 bp Feature: domain Description: HTH_XRE Location: 60661 6-606760 bp Feature: domain Description: Rol_Rep_N Location: 606793-607057 bp Feature: domain Description: Rol_Rep_N Location: 606793-607057 bp Feature: domain Description: Rep_trans Location: 607081-607693 bp Feature: domain Description: Rep_trans Location: 607081 -607693 bp Feature: gene Location: 608650-610560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608983-609721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608983-609721 bp Feature: domain Description: HNHc Note: nucleases Location: 610276-610441 bp Feature: domain Description: HNHc Note: nucleases Location: 61 0276-61 0441 bp Feature: gene Location: 610748-610888 bp Feature: gene Location: 610901-611404 bp Feature: domain Description: ArdA Location: 610919-611390 bp Feature: domain Description: ArdA Location: 61 091 9-61 1 390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), Dcm (COG0270), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275)

Seq: LR135332.1 Enterococcus faecium isolate E7471 genome assembly, plasmid: 2 (133389 bp)
Overview 1 RT 1: 57091-65557 bp 2 RT 2: 96876-105458 bp Neighborhood of RT #1 [57091, 65673] RVT-GII GIIM DUF3659 DUF3659 ClpA ClpA Neighborhood of RT #2 [96876, 105458] ClpA ClpA DUF3659 DUF3659 RVT-GII GIIM Feature: gene Location: 57091-57333 bp Feature: gene Location: 57443-57781 bp Feature: gene Location: 58216-59604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58537-59152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58537-59152 bp Feature: domain Description: GIIM Note: maturase Location: 59209-59425 bp Feature: domain Description: GIIM Note: maturase Location: 592 09-5942 5 bp Feature: gene Location: 60080-63721 bp Feature: domain Description: DUF3659 Location: 62489-62540 bp Feature: domain Description: DUF3659 Location: 62 489-62 540 bp Feature: domain Description: DUF3659 Location: 62591-62738 bp Feature: domain Description: DUF3659 Location: 62 591-62 738 bp Feature: gene Location: 63724-65673 bp Feature: domain Description: ClpA Location: 63808-64510 bp Feature: domain Description: ClpA Location: 63808-64510 bp Feature: domain Description: ClpA Location: 64591-65557 bp Feature: domain Description: ClpA Location: 64591-65557 bp Feature: gene Location: 96876-98825 bp Feature: domain Description: ClpA Location: 96960-97662 bp Feature: domain Description: ClpA Location: 96960-97662 bp Feature: domain Description: ClpA Location: 97743-98709 bp Feature: domain Description: ClpA Location: 97743-98709 bp Feature: gene Location: 98828-102469 bp Feature: domain Description: DUF3659 Location: 101237-101288 bp Feature: domain Description: DUF3659 Location: 1012 37-1012 88 bp Feature: domain Description: DUF3659 Location: 101339-101486 bp Feature: domain Description: DUF3659 Location: 101339-101486 bp Feature: gene Location: 102945-104333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103266-103881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032 66-103881 bp Feature: domain Description: GIIM Note: maturase Location: 103938-104154 bp Feature: domain Description: GIIM Note: maturase Location: 103938-104154 bp Feature: gene Location: 104768-105106 bp Feature: gene Location: 105216-105458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3659 (pfam12396), ClpA (TIGR02639)

Seq: LR135335.1 Enterococcus faecium isolate E7471 genome assembly, plasmid: 5 (35768 bp)
Overview 1 RT 1: 21797-26943 bp Neighborhood of RT #1 [21797, 26972] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 21797-21958 bp Feature: gene Location: 22041-22994 bp Feature: domain Description: Tra8 Location: 22044-22971 bp Feature: domain Description: Tra8 Location: 22044-22971 bp Feature: gene Location: 22972-24447 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23320-23785 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23 3 20-23 785 bp Feature: gene Location: 24785-26263 bp Feature: domain Description: HsdM Location: 24806-26231 bp Feature: domain Description: HsdM Location: 24806-2623 1 bp Feature: gene Location: 26286-26972 bp Feature: domain Description: Rve Location: 26295-26943 bp Feature: domain Description: Rve Location: 26295-26943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)