myRT

myRT report for GCA_900639535.1_E8202_hybrid_assembly

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Seq: LR135344.1 Enterococcus faecium isolate E8202 genome assembly, chromosome: 1 (3014357 bp)
Overview 1 RT 1: 1186133-1191982 bp 2 RT 2: 1912995-1918320 bp 3 RT 3: 2854084-2864989 bp Neighborhood of RT #1 [1186133, 1192005] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Neighborhood of RT #2 [1912995, 1918320] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #3 [2854084, 2865003] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 1186133-1187257 bp Feature: domain Description: PRK06019 Location: 1186157-1187246 bp Feature: domain Description: PRK0601 9 Location: 1 1 861 57-1 1 87246 bp Feature: gene Location: 1187270-1188565 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1187282-1188551 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 1 87282-1 1 88551 bp Feature: gene Location: 1188687-1190075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1189008-1189623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 89008-1 1 89623 bp Feature: domain Description: GIIM Note: maturase Location: 1189680-1189896 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 89680-1 1 89896 bp Feature: gene Location: 1190644-1191021 bp Feature: gene Location: 1191277-1192005 bp Feature: domain Description: PRK09362 Location: 1191280-1191982 bp Feature: domain Description: PRK09362 Location: 1 1 91 280-1 1 91 982 bp Feature: gene Location: 1912995-1913495 bp Feature: domain Description: ArdA Location: 1913013-1913484 bp Feature: domain Description: ArdA Location: 1 91 301 3-1 91 3484 bp Feature: gene Location: 1913508-1913660 bp Feature: gene Location: 1913836-1915746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1914169-1914907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 41 69-1 91 4907 bp Feature: domain Description: HNHc Note: nucleases Location: 1915462-1915627 bp Feature: domain Description: HNHc Note: nucleases Location: 1 91 5462-1 91 5627 bp Feature: gene Location: 1916626-1917810 bp Feature: domain Description: HTH_XRE Location: 1916656-1916800 bp Feature: domain Description: HTH_XRE Location: 1 91 6656-1 91 6800 bp Feature: domain Description: Rol_Rep_N Location: 1916833-1917097 bp Feature: domain Description: Rol_Rep_N Location: 1 91 6833-1 91 7097 bp Feature: domain Description: Rep_trans Location: 1917121-1917733 bp Feature: domain Description: Rep_trans Location: 1 91 71 21 -1 91 7733 bp Feature: gene Location: 1918066-1918320 bp Feature: gene Location: 2854084-2854428 bp Feature: domain Description: RelB_DinJ Location: 2854294-2854420 bp Feature: domain Description: RelB_DinJ Location: 2854294-2854420 bp Feature: gene Location: 2854497-2855513 bp Feature: domain Description: FtsK_SpoIIIE Location: 2855154-2855394 bp Feature: domain Description: FtsK_SpoIIIE Location: 28551 54-2855394 bp Feature: gene Location: 2856107-2857981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2856473-2857169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2856473-28571 69 bp Feature: domain Description: HNHc Note: nucleases Location: 2857709-2857868 bp Feature: domain Description: HNHc Note: nucleases Location: 2857709-2857868 bp Feature: gene Location: 2858083-2858463 bp Feature: domain Description: FtsK Location: 2858098-2858338 bp Feature: domain Description: FtsK Location: 2858098-2858338 bp Feature: gene Location: 2858508-2859650 bp Feature: domain Description: Dcm Location: 2858511-2859624 bp Feature: domain Description: Dcm Location: 285851 1 -2859624 bp Feature: gene Location: 2860185-2861369 bp Feature: domain Description: HTH_XRE Location: 2860215-2860359 bp Feature: domain Description: HTH_XRE Location: 286021 5-2860359 bp Feature: domain Description: Rol_Rep_N Location: 2860392-2860656 bp Feature: domain Description: Rol_Rep_N Location: 2860392-2860656 bp Feature: domain Description: Rep_trans Location: 2860680-2861292 bp Feature: domain Description: Rep_trans Location: 2860680-2861 292 bp Feature: gene Location: 2862249-2864159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2862582-2863320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2862582-2863320 bp Feature: domain Description: HNHc Note: nucleases Location: 2863875-2864040 bp Feature: domain Description: HNHc Note: nucleases Location: 2863875-2864040 bp Feature: gene Location: 2864347-2864487 bp Feature: gene Location: 2864500-2865003 bp Feature: domain Description: ArdA Location: 2864518-2864989 bp Feature: domain Description: ArdA Location: 286451 8-2864989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), RVT-GII, GIIM (pfam08388), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), ArdA (pfam07275), HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)
RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), FtsK (COG1674), Dcm (COG0270)